Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00096 ATGGCGTCTGAAATGATTGTCGAATCAGGCTCGTCGATAATAAATTTTGGGATGGAGTTAGTCGCGGATCATACTTCGGTGGTTTCTTTAAACTTATTTGTAGCTCTTCTTTGTGGTTGCATTGTCGTTGGTCATTTGTTAGAGGAAAACCGATGGATCAACGAGTCCATTACAGCCCTTGTCATTGGGTTGTGTACCGGCATCATCATATTGCTAACAACTAGAGGGAAAAGTTCGCATTTATTTTTGTTCAATGAAGAGCTTTTCTTTATCTATCTCCTTCCGCCTATCATTTTCAATGCCGGTTTCCAGGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCCTTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAGAAAATGAATATTGGTTCTCTTGATCTTGGAGATTATCTTGCTATTGGAGCTATTTTTTCTGCAACAGACTCTGTTTGTACCTTACAGGTTAGAAACTCTTCAAACTTTGATCTGTCTCACATGAATTCAAGCATCATTCTGCAATTCATTGGGAACTTTTTGTATCTGTTCATTGCAAGTACCGTGCTGGGAATTTTAGTTGGCCTCCTTAGTGCATACATAATTAAGAAGCTCTACTTTGGCAGGCATTCTACTGATCGTGAAGTTGCTCTTATGATACTCATGGCGTACTTTTCTTATATGCTAGCTGAACTCTTCTATTTAAGTGCAATTCTCACCGTATTCTTTTGCGGTATTGTTATGTCTCACTATACATGGCATAACGTAACTGAAAGTTCCAGAGTTACTACAAAGCATGCTTTCGCCACTCTTTCTTTTGTTGCTGAGATCTTTATCTTTCTTTACGTTGGCATGGATGCTCTTGATATCGAGAAGTGGAGATTTGTTAGCCACAGTCCGGGGAAATCAATTGGGGTGAGCTCAATACTGTTGGGACTGGTTCTGGTTGGAAGAGCAGCCTTCGTTTTTCCATTATCCTCCTTGTCCAATCTGACCAAGAAGTCCTCGCATGAAAAACTCAACTTGGAACAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGTGCCGTTTCAATGGCACTTGCATATAATCAGTTCACCAGGTCAGGCCACACCCATTTACCAGGCAATGCAATCATGATCACCAGTACCATCACAGTTGTTCTTTCCAGCACAGTGTTTTTTGGAATGATGACAAAACCCCTGATAGGGATTCTGCTACCCCAACCAAAATACACAATGAGCATGCTGTCTTCGGAACCCTCATCCCCAAAATCCTTCACAGTCCCACTCCTCACCAACGACGACCCAAACAGCCATTCCCAATCCCAATCCCATTCCCATTCCCCTCTGGGGCTGTTCCTGCGAATCCCGGCCCATACGGTTCACCATTATTGGCGGAGATTCGACGACGCCTTCATGCGTCCTGTTTTTGGAGGGAGGGGCTTTGTGCCCTTCGTCCCTGGCTCCCCGACCGAAGACCCCAACCAACAATGGCAAACTGAAGGACCACTTGAAGCCGCCGTTGATGACAACAAAACCATTCTTATACAGACTCGATGGTAA 1611 43.76 MASEMIVESGSSIINFGMELVADHTSVVSLNLFVALLCGCIVVGHLLEENRWINESITALVIGLCTGIIILLTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVRNSSNFDLSHMNSSIILQFIGNFLYLFIASTVLGILVGLLSAYIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKSSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVFFGMMTKPLIGILLPQPKYTMSMLSSEPSSPKSFTVPLLTNDDPNSHSQSQSHSHSPLGLFLRIPAHTVHHYWRRFDDAFMRPVFGGRGFVPFVPGSPTEDPNQQWQTEGPLEAAVDDNKTILIQTRW 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 590904 596069 + Cp4.1LG17g00950.1 Cpe17g00096 483414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00096 536 MobiDBLite consensus disorder prediction 441 462 - -
Cpe17g00096 536 Gene3D - 178 422 IPR038770 -
Cpe17g00096 536 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cpe17g00096 536 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cpe17g00096 536 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cpe17g00096 536 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cpe17g00096 536 PANTHER SODIUM/HYDROGEN EXCHANGER 3 16 172 - -
Cpe17g00096 536 PANTHER SODIUM/HYDROGEN EXCHANGER 3 175 515 - -
Cpe17g00096 536 PANTHER SODIUM/HYDROGEN EXCHANGER 16 172 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cpe17g00096 536 PANTHER SODIUM/HYDROGEN EXCHANGER 175 515 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cpe17g00096 536 Pfam Sodium/hydrogen exchanger family 185 417 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cpe17g00096 536 Pfam Sodium/hydrogen exchanger family 32 172 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00971 Cpe-Chr12:8191682 Cpe17g00096 Cpe-Chr17:590904 0 dispersed
Cpe17g00096 Cpe-Chr17:590904 Cpe20g00676 Cpe-Chr20:4583218 9.37E-22 dispersed
Cpe17g00096 Cpe-Chr17:590904 Cpe17g00001 Cpe-Chr17:13054 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00096 - - cmos:111436756 963.37