Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00099 ATGAGTTGCAACAAAGATGAAGCCGTTAGAGCAATGGAGATTGCTGAGAAGAAGATGGAAATCAAAGATTTCACCGGGGCTCGTAAGTTAGCTCTCCGAGCTCAACAGCTAAATCCTGATGGGGAGAACATTTCACAAATGCTTATGGTTTGTGATGTGCATTGTGCGGCAGAGAAGAAACTGTCTGGGAATGAGATGGATTGGTACGTATCGCATCGATCTCCACACAAAGCTGCTTCAACCTTTGATGTTGGGGTTCAAGCTAACTTCAGAAACAACTTTACAAGATTCGTTCCTCAACATCAGCCCCCTCAACAGCACGGACACTCGGGGTTCGGTCATAATCATGCTACTTTTTGGACTGTCTGTCCATTTTGTTCAGTGAGGTATCACTACTATAAAGAAGTGGTTAATAGATCACTTTGCTGTCAGAATTGCAAGAATCCCTTTGTTGCATATGATATGGAACTTCAAGGATCTCACCCTCGACCCGCGTATAACTTCAACCAGACATCATTTTTCCAGAAGAAGAATTTCTTCAATCACAGGGCGGAGACGGGACGCCCCAGACGCCCCAGAAACTCTCGGTCTGAGAAGGATAGAGCAGAATCTTTTCAGAGGACACGCAAAACTTCAGGTGGTGCTGTGGGGAAGTTCAATACTAAGAAAAAAAGGAAGCAGAGTTCCGAATCCAGTGACAGCTGCGATACTGGAAGTAGCTCCGAGTCTGAAGAGAACGTCATTACTGATGAAGTTGGCAGAAAGGATGTTGGACGCTCTGGTGAGCATCGTCCACGAAGATCAAGTCGACACAAGCAAAAGATTTCTTATGGTGAGAATATAAGTGACGATGATGATGATGACGACGACGACGACTTTGAGATCACACCAAAAAAATCAAGCAGAAGAGTACCATCCGACACTTCAGATGACGACATTGAAGAAGTATATGTGGATGATAGGTCTGTTGATGTGGATAATGATCAGAGGGAAACAAATGAGCCAGAAAATAATCGCACTGAAGGGAGTTCATCACGGAGAAGCACGGGAAGTAAGAAGGCGAGCCAAAAAGAAACAGCAGATAAGAATGTTCCTCAGAGAAGAATGAAGTCAGCTGGTGATCCCGAGCCTAATTTGCTCGAACGTCATGATCCTGATTTCAACGATTTTGATAAACTGCGTAATCGGGACTGTTTTTCTCCCGGGCAGATCTGGGCTATGTATCGTGATATTGATACCATGCCTCGATTTTATGCTCGGATCGAGGAAGTGTTTCCTTCGGAATTCAAGATTCAAGTCACATGGCTAGAGCCAGAAGCAACTGATAAAAAAATGCCAATTTCCTGCGGTGATTTTGTATTTGGAGCAACTGAAACCATGACAGATTGTGGTTCGATGTTTTCTCATGCTGTTTCTTGGGACAAAGGCGGCCGTAAAGACAGTTTCAAGATTTTTCCAAGAAAAGGGGAAACTTGGGCTCTCTTCAAGAACTGGGATAAGAATAGTCAATGTGATTCCAACAGCGAAGCCGAATATGAGTTTGTCGAGACATTATCGGAATATACCGAAGAAGCTGGTATTGACGTTGCACTCTTAGCTAAAGTGAAGGGCTTTTCGAGTCTCTTTTGTCGAATGGTCGATCACGAAGGAAAATCATTTCGAATCCCTGCAGATGAATTGTTCAGATTTTTGCACAGGATACCTTCGTTTCCACTCACAGGTGACGAACGAGAGGATGTTCCAAAAGGTTCTTTCGAACTCGATCCAGCTGCTCTTCCCCCCAATATTCCAGAGATCGCCATCCCCGAGCATTTGAAAGAGATGGCTGGCGAAACTGATCACGACACATTGAAGCCCACGAAGCGGCCTAAATGCAGGGAGGCTGCTACTGATGTTAAGAGTGATCTCTCGTCTGAGAGCGATGATGATTGCGCACATGTAGCCTCGTCGGGTGAGGCTTACGAAATTCCAGATCCTGAATTTCACAACTTCGACGTCGACAAATCTTCTGATAAGTTTAAGATTAATCAAGTCTGGGCACTGTACAGCGACGAGGATGCTTTGCCTAGATATTATGGTCTGATCAGGAAGATAACCCGGGAACCGAAGTTCGAAGTGAAGTTGACGTGGCTCGAGCCCTCTGCACTGCCAAGTGACGCTATCGAATGGGATGACAAAGATATGCTGATTTCTTGTGGGAAGTTTAGAACTCAGAGGAGGACTAGCATGCACTGCTGCAATTCCACTGGCTCCTTCTCACATCTGGTTAAAACCAATTCTTCTCCAAAGAATGAGATTTCCATCTCTCCTAGAAATGGTGAAGTTTGGGCATTGTATAAGAACTGGACTCCAGAATTCAGATGTTCAGATTTGGATAAATGTGTATACGATATAGCAGAAGTCATCGACGAGGACGATTTGCAAAAGGAAGTTATGGTCTTGGAACGCGTCGATGGTTATAACTCGGTCTTCAAGGCTCGAGCCAAAAACGATGGCTCAATGCTCACTATGGTAATCACCCAGGCCGAGCTTCTACGATTCTCCCATCAGATTCCTGCTTTTCGGTTGACTGATGAGCGGGGTGGTAGCTTGAGAGGTTGCTTGGAACTTGATCCCGCTGCCTTACCGGTATATTTTTTTTCTTGA 2646 44.9 MSCNKDEAVRAMEIAEKKMEIKDFTGARKLALRAQQLNPDGENISQMLMVCDVHCAAEKKLSGNEMDWYVSHRSPHKAASTFDVGVQANFRNNFTRFVPQHQPPQQHGHSGFGHNHATFWTVCPFCSVRYHYYKEVVNRSLCCQNCKNPFVAYDMELQGSHPRPAYNFNQTSFFQKKNFFNHRAETGRPRRPRNSRSEKDRAESFQRTRKTSGGAVGKFNTKKKRKQSSESSDSCDTGSSSESEENVITDEVGRKDVGRSGEHRPRRSSRHKQKISYGENISDDDDDDDDDDFEITPKKSSRRVPSDTSDDDIEEVYVDDRSVDVDNDQRETNEPENNRTEGSSSRRSTGSKKASQKETADKNVPQRRMKSAGDPEPNLLERHDPDFNDFDKLRNRDCFSPGQIWAMYRDIDTMPRFYARIEEVFPSEFKIQVTWLEPEATDKKMPISCGDFVFGATETMTDCGSMFSHAVSWDKGGRKDSFKIFPRKGETWALFKNWDKNSQCDSNSEAEYEFVETLSEYTEEAGIDVALLAKVKGFSSLFCRMVDHEGKSFRIPADELFRFLHRIPSFPLTGDEREDVPKGSFELDPAALPPNIPEIAIPEHLKEMAGETDHDTLKPTKRPKCREAATDVKSDLSSESDDDCAHVASSGEAYEIPDPEFHNFDVDKSSDKFKINQVWALYSDEDALPRYYGLIRKITREPKFEVKLTWLEPSALPSDAIEWDDKDMLISCGKFRTQRRTSMHCCNSTGSFSHLVKTNSSPKNEISISPRNGEVWALYKNWTPEFRCSDLDKCVYDIAEVIDEDDLQKEVMVLERVDGYNSVFKARAKNDGSMLTMVITQAELLRFSHQIPAFRLTDERGGSLRGCLELDPAALPVYFFS 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 612964 615804 + Cp4.1LG17g00940.1 Cpe17g00099 483417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00099 881 Pfam Domain of unknown function (DUF3444) 653 859 IPR024593 -
Cpe17g00099 881 Pfam Domain of unknown function (DUF3444) 380 576 IPR024593 -
Cpe17g00099 881 MobiDBLite consensus disorder prediction 181 207 - -
Cpe17g00099 881 MobiDBLite consensus disorder prediction 247 263 - -
Cpe17g00099 881 MobiDBLite consensus disorder prediction 180 385 - -
Cpe17g00099 881 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 70 - -
Cpe17g00099 881 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 82 880 - -
Cpe17g00099 881 PANTHER - 1 70 - -
Cpe17g00099 881 PANTHER - 82 880 - -
Cpe17g00099 881 MobiDBLite consensus disorder prediction 232 246 - -
Cpe17g00099 881 MobiDBLite consensus disorder prediction 320 341 - -
Cpe17g00099 881 MobiDBLite consensus disorder prediction 351 385 - -
Cpe17g00099 881 MobiDBLite consensus disorder prediction 294 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00099 - - - bhj:120092937 1130.16
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00255 Cpe17g00099 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00310 Cpe-Chr13:2614716 Cpe17g00099 Cpe-Chr17:612964 4.12E-13 dispersed
Cpe17g00099 Cpe-Chr17:612964 Cpe02g00341 Cpe-Chr2:1837715 1.08E-07 dispersed
Cpe12g00255 Cpe-Chr12:1699027 Cpe17g00099 Cpe-Chr17:612964 5.04E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g375 . . . . Bpe04g01172 . . . Cmo08g01173 Cmo17g00292 . . . . . . . . . . . . . . Cla06g00511 Cam06g0550 Cec06g0550 Cco06g0557 Clacu06g0536 Cmu06g0536 Cre06g1304 . . . . . . Chy11g01464 . . . . . . . . . . . . Cma08g01199 Cma17g00302 Car08g01076 Car17g00278 Cpe12g00255 Cpe17g00099 Bhi12g01747 . . . . . . . . . . . . . Lsi09g01390 . . Cme11g01970
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004670 2 2 0 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00099 Cpe_Chr17 FPKM 3.973059 4.650616 23.008253 22.917992 7.720733 8.429723 8.088062 2.797149 2.176835 2.146995