Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00100 ATGGCTTCATTTGGAGGCGATCGCGAGGACATTGATTGTACCGACACCGAAGTCTTTGATGGCCATCTTTCACCGCCCTCATGTTCTGGTGAGGAAACGGATAAGGCTTCATATTCTTCAGGAGCAGATCGTTTTTATGATGACGATTTTGAAACTCAAGTAGTAAATTTTGCTGGAGAAACTCAAGTCGTGAGTCCTCTAAATGATGAGTTTGAAACTCAATTAATGAATCCTTTAAATGATGAGTTTGAAACTCAATTAATGAGTCCTGTAAATGATGAGTTTGAAACTCAGTTAGTGAATCCTCTTGGACAAACTCAAGTGTTCAATGTTGCGAGTGAAACTCAAACTTTGAGTGTCTGTGGTGAAACCCAGCAACTTGATGATCCTATTCCTGATGGCATCGAGTGTATGGACTTTGACACTCAAATATTGAATGATTTTGATGATGAAATGGCTGGTGATTCCTATGAAGACGAAGGATCAAAGGGAACTGAAATTAATGTCGACAAAGATCTAACTGATGATGAATCAGCACAAAGTTTCTATCCATCCATGGAGAAGGATAAGGTTCAATTGAGCCCTCTTAGTGAACATGATGCGAGGAAGGATTTAAAGGCGCTACCGGACAAGTTGCCTGATAAAAAATGTAATTCAGGGCCTACACGACTTTCTTCAATACGTGCAGCTTCATTGCGTTCTTCTGGTTCAGCAGCCCGCAGTTCTGCCTTGCAGAAAAGAAATCTTGGGTCATGTTCTGTTATGATTGACAAGGATATAGAAAAATCATCCATTAAAGATAATCATATTGATCAACAGACTGATCTTGAGCAGTGCTGTGAGAATGCTGGAGAATTAGGTAACGTGAAGTGCAGAGCTGGCAGTTCAGCAGTGAGAAAACTTTTTACGAAAGACATTGTGGGAGACTTCGGAGATCTTCACTCAAGTCGTGATGTTGGCGACATGAACACACACGAGTTGACTGCATGCGATGGTGATCAGTTGGCAGGCTTAAGCTATGTTGATTCTCAAGAACCTGGGGATTTAATGCAAGACAATGCTCTTGATTTTGTCGATAAGTTTCTTAAAAACAATTCTTTGGAGTTTGATCAAGGAGGGGGTACCCGTAAATTGGATGCTATCGTGCAAACAAAGTCGGTTCTTAGCCCTAAAGGGCAATATAATCTGGCCAACATTGTTAACTGTATGAGAACAGTTGGAGAATCAAGAGTTTTTGACTGGGACGATAATCGGGAAGATGAAGGAGGTGGGGATATTTTCTGCAGAAGGAAGGAAGAGTTCTTCACTGAACCTCGAAAATCGAAAGGAAGAATACCAGACTCGAACTGTGATAGCAGAGGATCTTTAAGTATCCCAAACATGAAATCAAGGTTATTTTGTTCTGATTCACGCCTAGAGTTGAGTAAAGGAAGCGAGAATAACGAGACAGCCCGAGAAGCCAAAGTCAAATGTAAAAAGAATCTATACAATAAACTGGATCAGCCGAATGACGGTGATGCTTGTAGGGTAGAGTCGGAAGATGACGGCATTGAGCCTAATCCGCAAGAAATCCCTGATGTAGGTTTTGATACTCAGATGGCAGCCGAGGCACTGGAAACATTATTCAATGATGAGAGTATCAATAAGCTAGTTAATAATGAAGCAAATCAACATTTGGAAAATAGTCCAAAGGATTCTTTTCGAGGCTCTCCTACTGGAAAGTCAAACACTAGCTCGAACACGAGGAAATCCTTGAAAAAGGGAAGTGCTTCTAGTTCCGGGGTTGTCCCGAGGCAGTCCAAGAAAATAAACCGGAAGTTTTCTGGAAATTTCATGAAGGCGTGTGAAAATGAGACTGTAAAAATGTCAAGGAGGAATAATAAGACAGATGCTGATGGAATCATTGGTAATGGAAACACAGGCAGTGTGCCGAGCAATGTTGCTAAGGTTTCACCTGTTGCACGTCGAACTAGGCATTCAATGACAGTAAATCAATCGAAAAAGGCTAAGGTTGCATCTGGTGAATGTGAGCGGTCGGTTACAAAGGTTGGTCCATTAATCAAGAAAAGAAGTGCTGATCGAGCCACTGGGGACCCGAAGGCAAAGAGAAGAAAACCTCGGGAGGCAGTTTCTAAGATACTTGTAACCAAGTCGAAAGAAGGCACTAAAAATGATGCAACAAGCTCCATAGGACAACGAAGATCGTGTGATATGTTAGCCGGTCAGGTAAGTCTATCTGATGAGTTAGTTGGACAATCTGTAATTAGGCGCCCGAGGTCTTGTTCCACGAGGAAAACACGATCGTCATTATGTGTTATTTCATCTCTTGCTTCAAATGCGAACTTGGAAAGAGCAGGTGCAGCTAAGGATGAATCTCCTAGTAAAAGACGTAAACCATCCGACACGGTTTGTTCTACTCCGCCTGATAATTGTAGGACGCCTATAAATGCCGTATCACCCGTTTGTATGGGTAACGAGTATTACAAACAATCATGCAAAAAGAGCCCCTTCAAACCAAGTCTTTTGAAAGAACTTCGTGATTTAACTGCCACGGGGCTTGTATCGGGACCTTTATCAACTGAATCGAGGAGGAGAAAAGATATGAACGACGTTCAAGTCTTGTATAGTCAGCACCTCGATGAGGACATAATCAAACAACAAAAGAAGACGTTGACTCGCCTAGGGATTAAAGTGGCATCGTCCATGACCGAGGCAACACATTTCATTGCCGATAAATTTATTCGTACAAGGAATATGTTAGAAGCCATTGCTCTGGGTAAGCTTGTGGTGACACACCAATGGATTCAGAGTTGTGGACAGGCGAGATGCTTCATCGACGAAAAAAATTACATCCTACGAGACGCCAAAAAGGAGAAGGAATTTGGATTTAGCATGCCAGGTTCGCTGGCGAGTGCTCGTCAGCATCCTCTTCTAGAGGGTCGACGAGTGTTGATTACTCCAAATACAAAACCCGGGAAAGACGTCATTTCGAGCTTGGTCAAGGCAGTGAAGGGCCAGGCAGTAGAGAGGCTGGGGAGGTCTATGCTGAAGGATGATCAAATTCCAGATGATTTGTTGGTTTTGTCATGTGAAGAAGATTATGATATGTGTATGCCTTTTCTTGAAAAAGTGTATGGTTCCGAGCTGCTGCTTAACGGGATCGTAACTCAGAAGCTCGAGTTTGAAAGGTACCGTCTTTTCGTAGATCAAGTCAAGAGGACTCGTTCGACAATATGGCTCAAGAAAGATGGCAATAAGTTCCATCCTGTTACTAAACATCATTAA 3285 42.37 MASFGGDREDIDCTDTEVFDGHLSPPSCSGEETDKASYSSGADRFYDDDFETQVVNFAGETQVVSPLNDEFETQLMNPLNDEFETQLMSPVNDEFETQLVNPLGQTQVFNVASETQTLSVCGETQQLDDPIPDGIECMDFDTQILNDFDDEMAGDSYEDEGSKGTEINVDKDLTDDESAQSFYPSMEKDKVQLSPLSEHDARKDLKALPDKLPDKKCNSGPTRLSSIRAASLRSSGSAARSSALQKRNLGSCSVMIDKDIEKSSIKDNHIDQQTDLEQCCENAGELGNVKCRAGSSAVRKLFTKDIVGDFGDLHSSRDVGDMNTHELTACDGDQLAGLSYVDSQEPGDLMQDNALDFVDKFLKNNSLEFDQGGGTRKLDAIVQTKSVLSPKGQYNLANIVNCMRTVGESRVFDWDDNREDEGGGDIFCRRKEEFFTEPRKSKGRIPDSNCDSRGSLSIPNMKSRLFCSDSRLELSKGSENNETAREAKVKCKKNLYNKLDQPNDGDACRVESEDDGIEPNPQEIPDVGFDTQMAAEALETLFNDESINKLVNNEANQHLENSPKDSFRGSPTGKSNTSSNTRKSLKKGSASSSGVVPRQSKKINRKFSGNFMKACENETVKMSRRNNKTDADGIIGNGNTGSVPSNVAKVSPVARRTRHSMTVNQSKKAKVASGECERSVTKVGPLIKKRSADRATGDPKAKRRKPREAVSKILVTKSKEGTKNDATSSIGQRRSCDMLAGQVSLSDELVGQSVIRRPRSCSTRKTRSSLCVISSLASNANLERAGAAKDESPSKRRKPSDTVCSTPPDNCRTPINAVSPVCMGNEYYKQSCKKSPFKPSLLKELRDLTATGLVSGPLSTESRRRKDMNDVQVLYSQHLDEDIIKQQKKTLTRLGIKVASSMTEATHFIADKFIRTRNMLEAIALGKLVVTHQWIQSCGQARCFIDEKNYILRDAKKEKEFGFSMPGSLASARQHPLLEGRRVLITPNTKPGKDVISSLVKAVKGQAVERLGRSMLKDDQIPDDLLVLSCEEDYDMCMPFLEKVYGSELLLNGIVTQKLEFERYRLFVDQVKRTRSTIWLKKDGNKFHPVTKHH 1094
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 617338 622513 + Cp4.1LG17g01010.1 Cpe17g00100 483418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00100 1094 MobiDBLite consensus disorder prediction 157 176 - -
Cpe17g00100 1094 MobiDBLite consensus disorder prediction 557 606 - -
Cpe17g00100 1094 MobiDBLite consensus disorder prediction 1 42 - -
Cpe17g00100 1094 SMART BRCT_7 865 942 IPR001357 -
Cpe17g00100 1094 MobiDBLite consensus disorder prediction 783 809 - -
Cpe17g00100 1094 MobiDBLite consensus disorder prediction 502 516 - -
Cpe17g00100 1094 MobiDBLite consensus disorder prediction 152 176 - -
Cpe17g00100 1094 MobiDBLite consensus disorder prediction 502 526 - -
Cpe17g00100 1094 CDD BRCT_PAXIP1_rpt6_like 977 1060 - -
Cpe17g00100 1094 CDD BRCT_MDC1_rpt1 882 945 - -
Cpe17g00100 1094 Gene3D BRCT domain 974 1074 IPR036420 -
Cpe17g00100 1094 SUPERFAMILY BRCT domain 863 968 IPR036420 -
Cpe17g00100 1094 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 863 952 IPR001357 -
Cpe17g00100 1094 Gene3D BRCT domain 860 973 IPR036420 -
Cpe17g00100 1094 ProSiteProfiles BRCT domain profile. 863 952 IPR001357 -
Cpe17g00100 1094 MobiDBLite consensus disorder prediction 557 607 - -
Cpe17g00100 1094 MobiDBLite consensus disorder prediction 689 709 - -
Cpe17g00100 1094 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 124 1074 - -
Cpe17g00100 1094 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 124 1074 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00100 K20780 MDC1; mediator of DNA damage checkpoint protein 1 - csv:101217520 1371.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00254 Cpe17g00100 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00100 Cpe-Chr17:617338 Cpe19g00032 Cpe-Chr19:241917 3.56E-13 dispersed
Cpe12g00974 Cpe-Chr12:8210630 Cpe17g00100 Cpe-Chr17:617338 7.05E-09 transposed
Cpe12g00254 Cpe-Chr12:1692265 Cpe17g00100 Cpe-Chr17:617338 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g376 . Blo12g00044 Bda03g01216 . . . Bma04g01089 . Cmo08g01172 Cmo17g00291 . . . . . . . . . . . . . . . . . . . . . Cone14ag0793 Cone15ag0794 . . . . Chy11g01463 . . . . . . . . . . . . . . Car08g01075 Car17g00277 Cpe12g00254 Cpe17g00100 Bhi12g01748 . . . . . . . . . . . . . . . . Cme11g01969
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010432 1 1 1 1 1 1 2 0 1 1 0 1 0 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00100 Cpe_Chr17 FPKM 13.319722 11.958906 12.902921 11.058167 11.133182 12.76 11.984249 2.294043 1.877499 2.749753