Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00104 ATGGCGAGCGCAGTCGATGCTGCTGGAGATCCGATTCCTACATCAGCGGTGTTAATGTCCTCGTCAAAGCACATTGCGAACATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAGGAAGGATCCGAACCCGGAGAAATGCCTCGAAAAAGGCCAACAAGTTACTCGCTGCGTCCTCTCCCTGCTTAAAGATCTTCATCAAAGGTGCACAAAAGAGATGGATGCTTATGTCGGTTGCATGTACTACAATACAAATGAGTTTGATTTATGTCGCAAAGAGCAGGAAGCGTTCGAGAAAGCATGTCCCTTGGAATGA 321 47.66 MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCVLSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 642196 644313 + Cp4.1LG17g01000.1 Cpe17g00104 483422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00104 106 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE 1 105 IPR016680 GO:0006120
Cpe17g00104 106 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 26 67 - -
Cpe17g00104 106 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 68 106 - -
Cpe17g00104 106 Pfam CHCH domain 71 104 IPR010625 -
Cpe17g00104 106 PANTHER CHCH-RELATED 1 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00104 K03952 NDUFA8; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8 - csv:101212532 209.534
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00247 Cpe17g00104 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00247 Cpe-Chr12:1660873 Cpe17g00104 Cpe-Chr17:642196 2.60E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g383 . . . . . Bpe14g01156 . . Cmo08g01168 Cmo17g00283 . . . . . . . . . . . . . . . . . . . . . Cone14ag0797 Cone15ag0799 . . . . . . Blo02g00572 Blo07g00192 Bda11g00545 . . Bpe13g00644 . Bma06g01522 . . . Cma08g01195 Cma17g00295 Car08g01071 Car17g00271 Cpe12g00247 Cpe17g00104 Bhi12g01754 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003454 2 2 2 2 2 1 2 2 1 2 2 1 1 1 2 2 1 2 2 2 1 1 1 0 2 0 1 4 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00104 Cpe_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0