Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00108 ATGGACTCTGATCCTGAATCTCCGGCTTCTTCCACCAGGTTTGCTGATTGCAACGTTTGGAATTTTGATTTCACAATAGCTATTTCTAGTAGTAAGGCGTCCGAGCGAACGTTGCAAAGATCGAAGGTGTTGGAACCTTCAACTGTAGACAAATTGGATCAGCAAGAGTCGGAGGATATAGCTTGGTGCGATTCGATTGAACCTCAAGCGTCCGAAAGCAATGATTCAGGCGACACTGTTGACGAAAACCAATCAAATGATCAGACCGAAAATCAATCAAGTGATCAGACAGAAAACCAATCAAATGATCAGGCAGATCAAGCAGTGGGCACTCCCACTTCAGGGAGCAGAAGAGTGCGTGGATTCTCCGACACAATTGTCATTCATGATTTGAGATTATTAGATTTGGACGTTGAAAGAAAAAATGAATCATCTCCAAGAGGGGTGCTCGAGGACTGCTCAAGAAACTTGGATTGTGAAACAACTACTTCCCTGGCCAGCACTTCCGATTGGGAAGATCATCCGGACTCAAGAAATCTGAGTCATTGGAAAGGTTTCATTCGCTTACTGATGAAAGGACCTCAAATGCGATTTCAAACCTTTCCTCCTCTTAAATCTGTTCCAAAGCTCACCAGAAAAAAGAGCAAAAGAATTAGAGAGGATGTTCTTCCGACGTTATCACCAGTGATGGACTCTGCCATAGAGACTGAGTTCTGCTACTTCAGATCTTCTTGGAAGAATTTCACACTTTCAGAGCTGCAAGCTGCAAGCAATAACTTCAGCCAAGAAAACTTGATTGGTGAGGGCGGTTATTCTGAAGTTTACAAGGGGCAGTTGGAAGATGGGCAATTAGTCGCGATCAAGCGGCTTACAAGAGGCAACCCAGAAGAGATGACTGCAGACTTCTTGTCTGAGCTCGGAATTATAGTTCATGTTGATCATCCTAATATTGCGAGTGTAATTGGGTACGGAGTTGACGGGGGAATGCACCTTATACTTCATTTATCACCCCATGGGAGCCTGGCATCCATACTTTATGATCGATGGACTCACCATACTGTGTCAAAGTTTGAAGGAACATTCGGGTACCTTCCTCCCGAGTTCTTTATGCATGGAATTGTTGATGAAAAAACTGATGTCTATGCCTATGGAGTACTGTTGTTGGAACTTATTACGGGACGACGAGCAATAGATAGCGCACAGCAAAGCCTCGTGATGTGGGCGAAACCTATACTTCTTAAACAAGATCTCAAGGAGCTTGTCGATACATCACTTGCTGACGCATTCGACACCCAACAAATGAACCGTTTGATATCCGTAGCTTCAATGTGCATAGATCAATCTTCAGTTCAACGGCCAGAAATGAGTGAGATTGTTCAAATTCTGAAAGGGGATGAAGATAGTTTGCAGCGTGTAAAGCGACAGAAGTCAAAACTTCGAAGGACATACTCTGCAGAGCTTTTGGATGCAGAGGAGTATAATTCTACGAAGTATTTAACTGACATGGATCGACATTTGGAAATTGTTTTAGGAACGTGCGATGTTTAG 1548 43.41 MDSDPESPASSTRFADCNVWNFDFTIAISSSKASERTLQRSKVLEPSTVDKLDQQESEDIAWCDSIEPQASESNDSGDTVDENQSNDQTENQSSDQTENQSNDQADQAVGTPTSGSRRVRGFSDTIVIHDLRLLDLDVERKNESSPRGVLEDCSRNLDCETTTSLASTSDWEDHPDSRNLSHWKGFIRLLMKGPQMRFQTFPPLKSVPKLTRKKSKRIREDVLPTLSPVMDSAIETEFCYFRSSWKNFTLSELQAASNNFSQENLIGEGGYSEVYKGQLEDGQLVAIKRLTRGNPEEMTADFLSELGIIVHVDHPNIASVIGYGVDGGMHLILHLSPHGSLASILYDRWTHHTVSKFEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRRAIDSAQQSLVMWAKPILLKQDLKELVDTSLADAFDTQQMNRLISVASMCIDQSSVQRPEMSEIVQILKGDEDSLQRVKRQKSKLRRTYSAELLDAEEYNSTKYLTDMDRHLEIVLGTCDV 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 659671 665084 - Cp4.1LG17g01140.1 Cpe17g00108 483426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00108 515 Pfam Protein kinase domain 352 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00108 515 PANTHER OS08G0249100 PROTEIN 346 491 - -
Cpe17g00108 515 PANTHER OS08G0249100 PROTEIN 140 346 - -
Cpe17g00108 515 Gene3D Transferase(Phosphotransferase) domain 1 333 488 - -
Cpe17g00108 515 ProSitePatterns Protein kinases ATP-binding region signature. 266 288 IPR017441 GO:0005524
Cpe17g00108 515 PANTHER PROTEIN KINASE FAMILY PROTEIN 346 491 - -
Cpe17g00108 515 PANTHER PROTEIN KINASE FAMILY PROTEIN 140 346 - -
Cpe17g00108 515 MobiDBLite consensus disorder prediction 31 45 - -
Cpe17g00108 515 MobiDBLite consensus disorder prediction 67 118 - -
Cpe17g00108 515 MobiDBLite consensus disorder prediction 31 118 - -
Cpe17g00108 515 Coils Coil 462 482 - -
Cpe17g00108 515 ProSiteProfiles Protein kinase domain profile. 260 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00108 515 Gene3D Phosphorylase Kinase; domain 1 231 332 - -
Cpe17g00108 515 SUPERFAMILY Protein kinase-like (PK-like) 245 474 IPR011009 -
Cpe17g00108 515 Pfam Protein tyrosine and serine/threonine kinase 263 348 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00108 - - - cmos:111436808 646.736
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00242 Cpe17g00108 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00787 Cpe-Chr1:4610990 Cpe17g00108 Cpe-Chr17:659671 3.42E-104 dispersed
Cpe07g00923 Cpe-Chr7:8256576 Cpe17g00108 Cpe-Chr17:659671 3.33E-109 dispersed
Cpe14g00642 Cpe-Chr14:4149487 Cpe17g00108 Cpe-Chr17:659671 1.29E-104 dispersed
Cpe15g00004 Cpe-Chr15:44141 Cpe17g00108 Cpe-Chr17:659671 2.59E-73 dispersed
Cpe17g00108 Cpe-Chr17:659671 Cpe18g00626 Cpe-Chr18:6489675 5.97E-59 dispersed
Cpe12g00242 Cpe-Chr12:1630007 Cpe17g00108 Cpe-Chr17:659671 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g390 . Blo12g00063 . . Bpe04g01182 . Bma04g01062 . Cmo08g01162 . . . . . . . . . . . . . . . Cla06g00524 . . . . . . . Cone15ag0801 Cone7ag0189 . . . Chy11g01451 . . . . . . . . . . . . Cma08g01190 Cma17g00290 Car08g01067 Car17g00266 Cpe12g00242 Cpe17g00108 Bhi12g01765 . . . . . . . . . . . . . Lsi09g01380 . . Cme11g01956
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009081 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62927 PF00069 Pkinase 2.20E-08 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00108 Cpe_Chr17 FPKM 11.840358 9.707917 15.952212 15.856326 15.112426 15.882582 14.776216 12.371146 15.764497 13.586345