Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00110 ATGGGTTGTATCCACACAAAATGTTGCTGTCGGTACCCAAAATCATTGGTTGGAGAATCCCAGGACTTCCACCAAGGGGTTCCTTACTGTCTACAAGATAACAACACTGTGATAGAAAGAGCATTGGAGCTTATTCCTGTGGCTTCCCACAACTATCATTTGGATTACTTGGTATTGGCTCAGCGTGGTTACTACCCTGAATCTCCTGATAAAGAAAATCAAGACAGTTTCTGTATTAGAACAAATGTTCAAGGTAACCCAAATGCTCATTTTTTTGGTGTTTTTGATGGGCATGGTCAATTTGGAATGCAGTGTTCAAATTTTGTGAAGGATAGGTTAATAGAAAAGCTATGGAATGATCCCACATTGTTAGATGATCCTGTTCAAGCTTATAATTCAGCGTTTTTATCCACTAATGATGAATTGCATTCAAGTGAAATAGATGATTCTATGAGTGGAACAACAGCAATTACAGTCCTTGTTGTTGGGGATACTCTTTATGTAGCCAATGTGGGTGATTCAAGAGCTGTAATTGCTGTTAAAGAAGGGAATTGTGTTCTTGCCAAAGATTTGTCAAATGATCAAACACCATTTAGAAAGGATGAATATGAGAGGGTTAAGCTTTGTGGAGCTAGAGTTCTTAGTGTTGATCAAGTGGAAGGACTTGTGGATCCTGATATTCAATGCTGGGGTGATGAAGAAAGTCAGGGCGGCGATCCGCCTCGACTTTGGGTTCAAAATGGGCTGTATCCTGGGACTGCATTTACCAGGAGCATAGGTGATAGTACCGCCGAGCAGATCGGTGTAAATGCTGTTCCTGAGGTTTTAGTTCTTCAGCTCAACCCCAATCATCTTTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTCCTTTCAAGCCAAACTGTTGTTGATATGGCATCAAGTTATGCAGATCCTCAAGATGCATGTACCGCCATAGCTGCCGAGTCGTATAAACTATGGATGGAACATGAAAATCGTACCGATGATATAACCATCATTATTATTCATATCAAAGGCTTGTCTAATGTATGA 1056 40.53 MGCIHTKCCCRYPKSLVGESQDFHQGVPYCLQDNNTVIERALELIPVASHNYHLDYLVLAQRGYYPESPDKENQDSFCIRTNVQGNPNAHFFGVFDGHGQFGMQCSNFVKDRLIEKLWNDPTLLDDPVQAYNSAFLSTNDELHSSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGNCVLAKDLSNDQTPFRKDEYERVKLCGARVLSVDQVEGLVDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEQIGVNAVPEVLVLQLNPNHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIIIHIKGLSNV 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 676117 679856 - Cp4.1LG17g01050.1 Cpe17g00110 483428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00110 351 Pfam Protein phosphatase 2C 74 324 IPR001932 -
Cpe17g00110 351 Coils Coil 349 351 - -
Cpe17g00110 351 SMART PP2C_4 47 343 IPR001932 -
Cpe17g00110 351 CDD PP2Cc 71 328 IPR001932 -
Cpe17g00110 351 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Cpe17g00110 351 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Cpe17g00110 351 Gene3D - 50 347 IPR036457 -
Cpe17g00110 351 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 40 350 - -
Cpe17g00110 351 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 40 350 - -
Cpe17g00110 351 SUPERFAMILY PP2C-like 48 347 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01405 Cpe17g00110 CCT
Cpe12g00239 Cpe17g00110 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00110 Cpe-Chr17:676117 Cpe18g00410 Cpe-Chr18:5284713 1.15E-142 dispersed
Cpe12g00239 Cpe-Chr12:1606039 Cpe17g00110 Cpe-Chr17:676117 0 wgd
Cpe17g00110 Cpe-Chr17:676117 Cpe03g01405 Cpe-Chr3:11329796 7.99E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00110 - - cmax:111494336 711.064