Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00111 ATGGCCGTTTCCGGTTTCGAAGGCTTCGAAAAGCGCCTGGAGCTTCATTTCTCCGGCGACGATCCCGTCTTCAACATGGGCCTCCGTCAACTCCCCTTCGATTCTCTAGAACAAATCCTCCACGAAGTCCAATGCTCTGTCGTCTCCGCCGTCGGCAACCACTACTTCGACGCCTATGTGTTGTCTGAATCCAGCCTGTTCGTTTACCCAACCAAAATCATCATCAAAACCTGCGGCACAACACAGCTACTCAAATCCATCCCTCCATTGCTTCACCACGCGCTTAATCTCGGCCTTACGATCTCCTCTTGCCGTTACACCCGCGGTAACTTTATCTTTCCCCTGTCACAGCCTTTCCCCCACACAAGCTTCCACGAAGAAGTCGTGTACTTAGAAGATTCCCTCCCTAACCACCTCTGTTACCGCAAAGCTTCCGTTATGCCTTCTAACGTCACCGCACATGTCTGGCACGTGTTCTCCGCCTGCGATCAAACTCCCCTGGTTCATTTCCCGCCGTCGGATTTATACACCGTTGAAATATGTATGACGGAGCTTGACCGGACTCAGGCGAGGAAATTCTTCCGCCGTCCTGGCGATGGAAAAACCGGCGACGCTGCTGGCAAAGAGATGACGGAGATCGCCGGAATCCATAAAATTAACCCCAATGCTCTCATCTGTGATTTTGCGTTCGATCCTTGTGGTTACTCGATGAATGGAATCGACGGCGATCGATATTCCACGATTCATGTTACGCCGGAGGATGGGTATAGTTACGCTAGTTTTGAGTGCGTTGGTTCCATTTATGACGATGAGGATGACGAGGACGGCGGCGACGGCGACGATTTTATACGGATGTTAAGGAGAGCGGTGCAGGTTTTCCGACCGGGGAAGGTCTCGGTTTCGGTGACGACGGCGACCACCGCGTCGCATCGACTATGGGCGAGGATAGCCGGAGCAATGGAGCCGCTTGGGTTGAAATGCCGGAGTTGTATGGCGGATGAGTTTCCAGCCGCTGGGAGCGTCGTGTTTCAGACGTTTACCGCTCGCCGGAAAAAAACAGGGGAATGCGGCGGCGGTGGTAGATAA 1086 53.31 MAVSGFEGFEKRLELHFSGDDPVFNMGLRQLPFDSLEQILHEVQCSVVSAVGNHYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIPPLLHHALNLGLTISSCRYTRGNFIFPLSQPFPHTSFHEEVVYLEDSLPNHLCYRKASVMPSNVTAHVWHVFSACDQTPLVHFPPSDLYTVEICMTELDRTQARKFFRRPGDGKTGDAAGKEMTEIAGIHKINPNALICDFAFDPCGYSMNGIDGDRYSTIHVTPEDGYSYASFECVGSIYDDEDDEDGGDGDDFIRMLRRAVQVFRPGKVSVSVTTATTASHRLWARIAGAMEPLGLKCRSCMADEFPAAGSVVFQTFTARRKKTGECGGGGR 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 684771 685856 - Cp4.1LG17g01060.1 Cpe17g00111 483429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00111 361 Gene3D - 1 63 - -
Cpe17g00111 361 PANTHER S-ADENOSYLMETHIONINE DECARBOXYLASE 1 351 IPR001985 GO:0004014|GO:0006597|GO:0008295
Cpe17g00111 361 PIRSF SAM_decarbox_euk 1 355 IPR001985 GO:0004014|GO:0006597|GO:0008295
Cpe17g00111 361 SUPERFAMILY S-adenosylmethionine decarboxylase 5 347 IPR016067 GO:0004014|GO:0008295
Cpe17g00111 361 Pfam Adenosylmethionine decarboxylase 5 346 IPR001985 GO:0004014|GO:0006597|GO:0008295
Cpe17g00111 361 Gene3D - 64 349 - -
Cpe17g00111 361 TIGRFAM SAM_DCase: S-adenosylmethionine decarboxylase proenzyme 6 311 IPR001985 GO:0004014|GO:0006597|GO:0008295
Cpe17g00111 361 ProSitePatterns S-adenosylmethionine decarboxylase signature. 58 68 IPR018166 GO:0004014
Cpe17g00111 361 PANTHER S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME 4 1 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00111 K01611 speD, AMD1; S-adenosylmethionine decarboxylase [EC:4.1.1.50] - csv:101216328 610.912
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01406 Cpe17g00111 CCT
Cpe12g00238 Cpe17g00111 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01428 Cpe-Chr2:12401044 Cpe17g00111 Cpe-Chr17:684771 3.60E-84 dispersed
Cpe03g00697 Cpe-Chr3:4224387 Cpe17g00111 Cpe-Chr17:684771 2.41E-84 dispersed
Cpe11g00828 Cpe-Chr11:6721206 Cpe17g00111 Cpe-Chr17:684771 4.91E-47 dispersed
Cpe12g00238 Cpe-Chr12:1600765 Cpe17g00111 Cpe-Chr17:684771 0 wgd
Cpe17g00111 Cpe-Chr17:684771 Cpe03g01406 Cpe-Chr3:11335497 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g402 . . . . . . . Bma05g00953 Cmo08g01156 Cmo17g00273 . Cma14g01666 . Car14g01499 Sed02g1284 . Cpe03g01406 Bhi01g00881 Tan10g0911 Cmetu06g2183 Lac12g2350 . . . Cla06g00529 Cam06g0568 Cec06g0568 Cco06g0575 Clacu06g0556 Cmu06g0551 Cre06g1320 . . . . Lsi05g01471 . Chy11g01446 Cme06g00663 Blo02g00563 . . . . . . . . . Cmo14g01710 Cma08g01185 Cma17g00285 Car08g01062 Car17g00261 Cpe12g00238 Cpe17g00111 Bhi12g01777 . . . . . . Cla05g00592 Cam05g0652 Cec05g0660 Cco05g0656 Clacu05g0645 Cmu05g0614 Cre05g0682 Lsi09g01374 Csa03g01388 Chy06g00631 Cme11g01951
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002049 2 3 2 2 3 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 1 2 2 2 2 2 2 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00111 Cpe_Chr17 FPKM 6.417171 6.334394 0.0 0.0 0.0 0.353114 0.0 0.0 0.0 0.0