Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00113 ATGCGAGGCCATGCTTGGATCAATACCATTCTTCCTGATGAGCTGATCATTGAGATCTTCCGGTGCCTTGACTCCAAGCTGAGTCGCGATGCTTGTTCTCTCGTCTGCAAGCGTTGGCTCAAACTCGAGCGACTCAGCCGAACCACTCTACGAATTGGCGCAACTGGTAGTCCCGAGCTCTTTGTTCAGCTCCTTGCTCGCCGTTTCGTCAATATCAGAAATGTCCACATTGACGAACGCCTGGCGATTTCTCTCCCCCTTCATTCAGGAAGAAGACGTCGCAATGAAGTCATGTGCTTGCCATTTAACTCACACCATGCAACTGATAATACTGGGGCTGAAGGTGCGCTGGAGTCTTCTTATCTGTCAGATGCTGGGCTAATTGCTCTCTCCGTAGGTTTTCCAAACCTGGAGAAACTGAGCTTAATTTGGTGCTCTAACATTTCAAGTCAGGGTTTAACATCCCTTGCTGAGAAGTGTAGGTTTTTGAAGTCGCTGGATCTACAGGGTTGCTATGTTGGGGACCAAGGTGTTGCTGCAGTTGGGGAATTCTGTAAACAACTTGAAGATGTAAATTTGCGTTTTTGTGAAGGGTTGACTGATACTGGTTTGGTTGAATTAGCACGTGGTTGTGGGAAATCATTGAAAACATTTGGTATTACAGCCTGTGCCAAAATAACGGATGTCTCATTAGAAGCTGTGGGTATGCACTGCAAATATCTGGAGTCTATGTCACTAGATTCGGAAATTATCCACAACAAAGGAGTGCTTTCTGTAGCCCAAGGATGCCCACTTTTGAAAGTCTTGAAGCTACAGTGTACAAATGTCACAGATGAAGCTTTGGTAGCTGTAGGCTCCTTATGTCCTTCACTGGAATTATTGGCTTTATACAGTTTTCAAGAATTTACCGACAAGGGACTACGTGCCATTGGAGTAGGCTGCAAGAAGTTAAAAAATCTCACTCTAAGTGATTGCTATTTCCTGAGCGATATAGGCTTGGATGCAGTTGCAGCTGGTTGTAAAGGACTAACACATCTTGAAGTTAACGGCTGCCACAACATTGGATCCTTGGGACTAGAAGCCATCGGAAAATCTTGCCACCAGCTAACTGAATTGGCTTTGCTGTACTGCCAAAAGATTGTTAACTCTGGTCTTCTTGGAATTGGTCAAAGTTGCAAGTTCTTACAAGCACTCCACTTGGTAGATTGCTCGAGAATTGGAGATGAAGCGATATGTGGCATAGCAAAAGGATGCAGAAATTTGAAGAAACTCCATATTCGTCGATGTTATGAGATTGGGGATGCAGGAATTGTAGCTATTGGCGAGAATTGCAAATTCCTCACAGATTTGAGCCTCAGATTTTGTGACAGGGTTGGTGATGAGGGGCTGATTGCCATTGGCAAGGGTTGTTCCCTTCAGCAGCTGAATGTTAGTGGGTGCCATCGCATCGGTGATGCGGGACTTGTAGCCATTGCTAGAGGTTGTCCTCAATTGAGTTACTTGGACGTGAGCGTTCTCGAGAACTTGGGGGATATGGCAATGGCCGAGTTAGGGGAAGGCTGCCCTTTGCTTAAGGACATAGTACTGTCTCACTGTCACCAGATAACCGATGCTGGTTTAATGCATTTAGTGAAGAGATGCACCATGCTTGAATCCTGTCAAATGGTCTATTGTCCTGGCATCACCGCAGCTGGCGTCGCCACTGTCGTTTCCAGCTGCCCAAGCGTAAAGAAAATTCTGGTCGAGAAATGGAAGGTGAGCGAGCGAACAAAAAGACGTGCAGGCTCGGTTATTTCCTACCTTTGCGTCGACCTCTAG 1818 46.09 MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPELFVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHHATDNTGAEGALESSYLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDQGVAAVGEFCKQLEDVNLRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMHCKYLESMSLDSEIIHNKGVLSVAQGCPLLKVLKLQCTNVTDEALVAVGSLCPSLELLALYSFQEFTDKGLRAIGVGCKKLKNLTLSDCYFLSDIGLDAVAAGCKGLTHLEVNGCHNIGSLGLEAIGKSCHQLTELALLYCQKIVNSGLLGIGQSCKFLQALHLVDCSRIGDEAICGIAKGCRNLKKLHIRRCYEIGDAGIVAIGENCKFLTDLSLRFCDRVGDEGLIAIGKGCSLQQLNVSGCHRIGDAGLVAIARGCPQLSYLDVSVLENLGDMAMAELGEGCPLLKDIVLSHCHQITDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 703785 709065 - Cp4.1LG17g01120.1 Cpe17g00113 483431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00113 605 Gene3D Ribonuclease Inhibitor 117 352 IPR032675 -
Cpe17g00113 605 SMART LRR_CC_2 160 184 IPR006553 -
Cpe17g00113 605 SMART LRR_CC_2 366 391 IPR006553 -
Cpe17g00113 605 SMART LRR_CC_2 418 443 IPR006553 -
Cpe17g00113 605 SMART LRR_CC_2 288 313 IPR006553 -
Cpe17g00113 605 SMART LRR_CC_2 212 237 IPR006553 -
Cpe17g00113 605 SMART LRR_CC_2 185 210 IPR006553 -
Cpe17g00113 605 SMART LRR_CC_2 392 417 IPR006553 -
Cpe17g00113 605 SMART LRR_CC_2 263 287 IPR006553 -
Cpe17g00113 605 SMART LRR_CC_2 470 494 IPR006553 -
Cpe17g00113 605 SMART LRR_CC_2 521 546 IPR006553 -
Cpe17g00113 605 SMART LRR_CC_2 444 469 IPR006553 -
Cpe17g00113 605 SMART LRR_CC_2 495 520 IPR006553 -
Cpe17g00113 605 SMART LRR_CC_2 340 365 IPR006553 -
Cpe17g00113 605 SMART LRR_CC_2 238 262 IPR006553 -
Cpe17g00113 605 SMART LRR_CC_2 314 339 IPR006553 -
Cpe17g00113 605 SMART LRR_CC_2 547 572 IPR006553 -
Cpe17g00113 605 SMART LRR_CC_2 134 159 IPR006553 -
Cpe17g00113 605 Gene3D - 7 47 - -
Cpe17g00113 605 Gene3D Ribonuclease Inhibitor 353 605 IPR032675 -
Cpe17g00113 605 PANTHER UNCHARACTERIZED 12 486 - -
Cpe17g00113 605 SUPERFAMILY F-box domain 10 42 IPR036047 GO:0005515
Cpe17g00113 605 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 476 580 - -
Cpe17g00113 605 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 12 486 - -
Cpe17g00113 605 SUPERFAMILY RNI-like 120 357 - -
Cpe17g00113 605 PANTHER UNCHARACTERIZED 476 580 - -
Cpe17g00113 605 Pfam Leucine Rich repeat 444 466 IPR001611 GO:0005515
Cpe17g00113 605 Pfam Leucine Rich repeat 343 362 IPR001611 GO:0005515
Cpe17g00113 605 Pfam Leucine Rich repeat 188 208 IPR001611 GO:0005515
Cpe17g00113 605 Pfam Leucine Rich repeat 470 492 IPR001611 GO:0005515
Cpe17g00113 605 Pfam Leucine Rich repeat 521 543 IPR001611 GO:0005515
Cpe17g00113 605 Pfam Leucine Rich repeat 159 180 IPR001611 GO:0005515
Cpe17g00113 605 Pfam Leucine Rich repeat 418 440 IPR001611 GO:0005515
Cpe17g00113 605 Pfam F-box 11 48 IPR041567 -
Cpe17g00113 605 SUPERFAMILY RNI-like 337 586 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00113 K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20 - csv:101216664 1107.05
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00236 Cpe17g00113 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00198 Cpe-Chr2:1028951 Cpe17g00113 Cpe-Chr17:703785 6.60E-12 dispersed
Cpe04g00531 Cpe-Chr4:5772550 Cpe17g00113 Cpe-Chr17:703785 2.63E-07 dispersed
Cpe04g00793 Cpe-Chr4:7527078 Cpe17g00113 Cpe-Chr17:703785 3.59E-06 dispersed
Cpe11g01066 Cpe-Chr11:8950296 Cpe17g00113 Cpe-Chr17:703785 2.84E-08 dispersed
Cpe14g00168 Cpe-Chr14:934470 Cpe17g00113 Cpe-Chr17:703785 3.63E-12 dispersed
Cpe14g00169 Cpe-Chr14:938520 Cpe17g00113 Cpe-Chr17:703785 3.70E-13 dispersed
Cpe17g00113 Cpe-Chr17:703785 Cpe18g00494 Cpe-Chr18:5753249 3.29E-20 dispersed
Cpe17g00624 Cpe-Chr17:5122738 Cpe17g00113 Cpe-Chr17:703785 1.39E-11 dispersed
Cpe01g01156 Cpe-Chr1:6878436 Cpe17g00113 Cpe-Chr17:703785 6.85E-12 transposed
Cpe04g00211 Cpe-Chr4:2255454 Cpe17g00113 Cpe-Chr17:703785 1.74E-19 transposed
Cpe13g00654 Cpe-Chr13:6199654 Cpe17g00113 Cpe-Chr17:703785 2.62E-15 transposed
Cpe16g00678 Cpe-Chr16:7064956 Cpe17g00113 Cpe-Chr17:703785 6.77E-18 transposed
Cpe06g00856 Cpe-Chr6:5556087 Cpe17g00113 Cpe-Chr17:703785 2.39E-12 transposed
Cpe12g00236 Cpe-Chr12:1578988 Cpe17g00113 Cpe-Chr17:703785 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010433 1 1 0 1 1 1 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00113 Cpe_Chr17 FPKM 0.220513 0.328123 0.0 0.0 0.0 0.0 0.0 0.365486 0.0 0.0