Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00135 GTTCATGACCTTGAGAGACCCCTTGTCTCTGATGCTGCGGTTGTCACTCAAAACCAAATCAATGAACTTCCGAGAGATTATGATTTGGAGGGTGCACTTCAAACTGATGGGCATTTTCGGTCCCCAAGTTTACACGGATTGATCCACAAGCAAAGACTACCTGCTGCGTCTCCCCATTTATGTCAGGGTGATAGATTGGTTCCAGATGTAGTTGCTGATCCTTTAGACGATATTTCTGTTGGTCAAACACTTAAACGTTCATATTTCACAAGCCAGATTCCAGAAGTTCGAAAGCATGCGAAACCAAGCATAGGAAGTGATCAACCCCACGAGTCTGCAAGTCAAGTTATCTCACATGGAAGAAGTTACCTCACTTTGGAGGTTACCTCCGGTCCTTCTCGTGGAGTGCGCTATTCCATACATTCTGCGGACACATCTAGGCTCCAGTTGACCCTTGGAAGAGCACCTCCTAGTGATATACAGCTAAAGGATTCAGAAGTTTCAGGGAAGCATGCCTCAATAAAATGGAATCTAAATAATATGAAATGGGAGCTTGTGGACCTGGGTAGCTTAAATGGGACCTTATTAAATTCTCAACCAATCAGCAATCCCGATTCTGGAATTAGACAGTTGAGTGACCCAGTTGAGCTTGCTAGTGGAGATGTTATAACTCTTGGTACAAGCTCCACTGTGTATGTTCAAATTACATCTGAGATTGAGAGCCATATTCCTTTTGGAGTTGGGATGGCTTCAGATCCAATGGCGTTACGTCGAGGTGGAAAGAAATTTGCCATGGAAGATGTTTGCTATTATCAATGGCCTCTTCCTGGGGTTGATCAGTTTGGACTCTTTGGTATCTGCGATGGGCATAGTGGAGTAGGGGCTGCCAAATCTGCTAGCGAGATTCTTCCGGAGAAGGTCGCCACAATTCTATCTGATCCACTAAAGAGGGAGAGGGTAGTATCTCTTTGTGATGCTTCAGATGTTCTTAGAGAAGCATTTTCTCAGACTGAAGCTTGCATGAATCACTATTATGAGGGTTGTACTGCCACGGTGCTTTTGGTATGGGCTGATAATGACGATAATTACTTCGTGCAATGTGCGAATGTCGGGGACTCTGCTTGTGTTATGAATGTTCATGGGAAGCTTATAAGGATGACAGAAGACCACAGGATAACTAGCTATTCAGAAAGACTCCGAATAGAACAAGCAGGAGAACCATTGAAAGATGGGGAGACACGCTTGTGTGGTAATGAAAAATCTGTCTTCACATTATTAGCAAATAGCTATTTTTGGATGTTGGTCATGTTGCTTTACACATTGCCTCCCTGGCTCAGGCTTGAACCTTGCAAGGATGCTTGTGATGGCTTTTGGGATGTGATTGGTGTGAAGAAGGCAATTCAGCTGGTCCTTCAGGCTAGGGAAAGATACTCCACAGGTGCAGAAAAGTCGGCCGAAAAGATAGCCAATTTTTTGTTGGGCGAGGCTAGAACACTGCGTACAAAAGATAACACTTCTATTATTTTCTTAGATTTTGACGTTTCTCATAGAATCACTTGTAAAGTTGAACCATGA 1575 43.68 VHDLERPLVSDAAVVTQNQINELPRDYDLEGALQTDGHFRSPSLHGLIHKQRLPAASPHLCQGDRLVPDVVADPLDDISVGQTLKRSYFTSQIPEVRKHAKPSIGSDQPHESASQVISHGRSYLTLEVTSGPSRGVRYSIHSADTSRLQLTLGRAPPSDIQLKDSEVSGKHASIKWNLNNMKWELVDLGSLNGTLLNSQPISNPDSGIRQLSDPVELASGDVITLGTSSTVYVQITSEIESHIPFGVGMASDPMALRRGGKKFAMEDVCYYQWPLPGVDQFGLFGICDGHSGVGAAKSASEILPEKVATILSDPLKRERVVSLCDASDVLREAFSQTEACMNHYYEGCTATVLLVWADNDDNYFVQCANVGDSACVMNVHGKLIRMTEDHRITSYSERLRIEQAGEPLKDGETRLCGNEKSVFTLLANSYFWMLVMLLYTLPPWLRLEPCKDACDGFWDVIGVKKAIQLVLQARERYSTGAEKSAEKIANFLLGEARTLRTKDNTSIIFLDFDVSHRITCKVEP 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 841158 845833 + Cp4.1LG17g01360.1 Cpe17g00135 483453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00135 524 PANTHER PROTEIN PHOSPHATASE 2C 2 416 IPR015655 GO:0004722|GO:0006470
Cpe17g00135 524 PANTHER PROTEIN PHOSPHATASE 2C 453 523 IPR015655 GO:0004722|GO:0006470
Cpe17g00135 524 Pfam FHA domain 151 226 IPR000253 GO:0005515
Cpe17g00135 524 SUPERFAMILY PP2C-like 259 513 IPR036457 -
Cpe17g00135 524 CDD FHA 124 232 IPR000253 GO:0005515
Cpe17g00135 524 PANTHER PROTEIN PHOSPHATASE 2C 70 2 416 - -
Cpe17g00135 524 PANTHER PROTEIN PHOSPHATASE 2C 70 453 523 - -
Cpe17g00135 524 SUPERFAMILY SMAD/FHA domain 123 233 IPR008984 GO:0005515
Cpe17g00135 524 SMART PP2C_4 240 510 IPR001932 -
Cpe17g00135 524 ProSiteProfiles PPM-type phosphatase domain profile. 246 512 IPR001932 -
Cpe17g00135 524 Gene3D - 118 255 - -
Cpe17g00135 524 Pfam Protein phosphatase 2C 453 505 IPR001932 -
Cpe17g00135 524 Pfam Protein phosphatase 2C 257 427 IPR001932 -
Cpe17g00135 524 ProSiteProfiles Forkhead-associated (FHA) domain profile. 150 201 IPR000253 GO:0005515
Cpe17g00135 524 Gene3D - 256 522 IPR036457 -
Cpe17g00135 524 CDD PP2Cc 258 512 IPR001932 -
Cpe17g00135 524 SMART FHA_2 149 201 IPR000253 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00212 Cpe17g00135 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01497 Cpe-Chr3:11809192 Cpe17g00135 Cpe-Chr17:841158 8.36E-06 dispersed
Cpe17g00135 Cpe-Chr17:841158 Cpe02g00310 Cpe-Chr2:1640017 1.35E-13 dispersed
Cpe12g00212 Cpe-Chr12:1384868 Cpe17g00135 Cpe-Chr17:841158 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00135 K01090 - csv:101217195 810.446