Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00136 GTTTCTTCTATTTATTCCGCTCCTCACCATGAACAAACCGGTGCTCGGATTTATGCGGATGAGCTTATAGATTCTGTTCAAGAGGATATATTGACTGACCTTAGAGATGCTTTGGCAAAGCAGCGTTCAAGTTGCATAACTGGTTCTGGGTTGGAACGTTCAAGAGAAGAGCGTTATCGAGGTTGCATACAACACCGGTTGAATGATCTAGAAGAGTTGCCTTCAAGTAGAGGGGAGAACTTACAAACAAAGTGCTTACATGAACTGTATGGGTTAAAGTTACTAGATTTGCAAAGAAAGGTACGATCTCATGTAAGTTCAGAGTACTGGCTTCGAGCAATTTGTGCACATCCAGACAAACAATTATTTGATTGGGGCATGATGCGATTGCACCGTCCACCATATGGCATAGGAGATGCTTTTGCCTTGGAAGCTGATGATCAATTGTGGAGGAAGCGGGATGCTGAGAGGACATCAAGGTTAGAAGAGGAGGAGAAGAGCCAAATCGAGACTAGGAAAAGAAAGTTTTTTGCTGAGATACTGAATGCTGTTCGTGAATTCCATTTACAAATTCAAGCTTCTATAAAACGTCGGAAACAGAGAAATGACGGAGTTCAGGCATGGCATGGAAGACAAAGGCAACGTGCTACAAGGGCAGAAAAATTGAGGTTCCAAGCACTAAAGGCAGATGATCAAGAAGCTTACATGAGATTGGTTAAGGAGAGCAAGAATGAACGATTAACAACACTTCTTGAAGAAACAAACAAACTACTTGTTAACTTGGGTGCTGCCGTTCAAAGACAGAAAGATTCTAAACTCTCTGATGGCATTGAGGCCTTGGATGAATCTGATGTTGATTTAACCGATTTGGATTCTTCAAAGATTGCAACCCCTCAAGATTTACTCATGGATGAAGATTTAGATGCCATTGATTCTGACCGCAATGATGAAAGTGGTGATTTGCTTGAAGGGCAGCGACAATATAACTCTGCAATTCATTCAATTCAGGAAAAGGTGACTGAGCAGCCTTCCATGCTACAAGGAGGAGAGTTGAGGCCCTACCAAATAGAAGGACTTCAGTGGATGGTTTCGTTATTCAATAACAATCTGAATGGAATATTGGCTGATGAAATGGGACTGGGAAAAACAATACAAACAATCTCATTGATAGCGTACCTCATGGAATATAAGGATGTGACTGGACCTCATCTAATAGTTGCTCCCAAGGCAGTACTGCCAAACTGGATTCATGAATTCACAACATGGGCCCCGAGTATTGTTGCTGTTCTTTACGACGGGCGTCAGGAGGAGAGAAAGGCTATAAAGGAGGAGCTGTTGAGCGAAGGAAAATTTTGTGTCTTGATTACACATTATGATCTCATTATGCGAGATAAATCATTTTTGAAGAAAGTACATTGGTATTATATGATTGTTGATGAAGGTCACCGGCTGAAAAATCGTGATTGTGCTCTTGCACAAACACTTGCAGGCTACCAGATCAAACGTAGACTTCTCTTAACTGGTACACCTATCCAGAACAGTTTGCAGGAATTATGGTCCCTGCTTAATTTTCTCCTGCCCCATATATTTAATTCTGTCCAGAATTTCCAGGAGTGGTTTAATGCGCCATTTGCAGATCGGAGTGATGTTACTCTGACTGATGAAGAAGAGTTACTGATTATTCGCCGTCTGCATCATGTTATTAGGCCATTCATATTGAGGAGGAAGAAGGATGAAGTGGAGAAGTATCTACCCGAGAAGTCACAAGTCATACTCAAATGTGATATGTCAGCATGGCAGAAAGTATACTATCAACAAGTCACTTCTATTGGCAGAGTTGACACTGGTTCTGGCAAATCAAAGTCCCTACAAAATTTAACAATGCAGCTGAGGAAGTGTTGTAATCATCCGTATCTTTTTATTTTGGGAGATTATAATATTTGGCGGAAGGAGGAGATCATCAGAGCTTCTGGGAAATTTGAATTACTGGATCGTTTACTCCCAAAGCTACATAGAGCTGGGCATAGAGTCCTGCTTTTCTCACAAATGACCCGTCTTATGGACATTCTTGAAATTTATCTTCAGCTCCACGACTTTAAATATCTGCGACTTGATGTTGAAGAGGTAATCCTGGAGCGTGCAAAACAGAAGATGGGGATTGATGCCAAGGTTATCCAGGCTGGACTTTTCAATACAACTTCAACAGCTCAAGACCGAAGAGAGATGTTGGAGGAGATTATGCGTAGAGGAACAAGCGCGCTTGGAACTGATGTACCAAGTGAGAGAGAAATCAATCGCCTTGCAGCTCGATCAGACGAAGAATTTTGGCTGTTTGAGAAAATGGATGAAGAAAGACGACAGAAGGAGAAATATAGATCTCGTTTAATGGAAGAACACGAGGTACCTGAATGGGTGTACTCAGTACCAGACAGTAATGAAGAGAAGAACAAGGGTTCGGAACTTGTCGGTGTTGCGGGAAAACGAAAAAGAAAGGAGGTGGTTTATGTGGATACATTGAGTGATTTGCAGTGGATGAAGGCTGTAGAAAATGGAGAAATTCCAAACCTTTCAATGAAAGGAAATAGAAGAGAGACTCCCACACGTGAAGGCAGTGCATCAACCAGCAATATCACCAGCACAAGAGCAGAGGATAAGCTGATAGAATATGATGATACCGTGCCGCTAACGAGTGAGGGAACAAGTGAAGACAAGTCTGGTTTAGAGCCAACCCCAGATGAACAGAAGTTAGAACTGGGGACGAGTATTAGAAAACACGAATTCCTGGCCGAGTCGGGAAGTGAATGGAGTCGATGTGTAATAACGTGGAAAGCACACAAGAAGAAGCGATCGAGCTATGTCCAGAGTTCTTCAGATCCTAGACATAACTCCAATGGAAGGGGAAATGGATGGGCTTGA 2916 42.22 VSSIYSAPHHEQTGARIYADELIDSVQEDILTDLRDALAKQRSSCITGSGLERSREERYRGCIQHRLNDLEELPSSRGENLQTKCLHELYGLKLLDLQRKVRSHVSSEYWLRAICAHPDKQLFDWGMMRLHRPPYGIGDAFALEADDQLWRKRDAERTSRLEEEEKSQIETRKRKFFAEILNAVREFHLQIQASIKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKLSDGIEALDESDVDLTDLDSSKIATPQDLLMDEDLDAIDSDRNDESGDLLEGQRQYNSAIHSIQEKVTEQPSMLQGGELRPYQIEGLQWMVSLFNNNLNGILADEMGLGKTIQTISLIAYLMEYKDVTGPHLIVAPKAVLPNWIHEFTTWAPSIVAVLYDGRQEERKAIKEELLSEGKFCVLITHYDLIMRDKSFLKKVHWYYMIVDEGHRLKNRDCALAQTLAGYQIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFQEWFNAPFADRSDVTLTDEEELLIIRRLHHVIRPFILRRKKDEVEKYLPEKSQVILKCDMSAWQKVYYQQVTSIGRVDTGSGKSKSLQNLTMQLRKCCNHPYLFILGDYNIWRKEEIIRASGKFELLDRLLPKLHRAGHRVLLFSQMTRLMDILEIYLQLHDFKYLRLDVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSALGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKEKYRSRLMEEHEVPEWVYSVPDSNEEKNKGSELVGVAGKRKRKEVVYVDTLSDLQWMKAVENGEIPNLSMKGNRRETPTREGSASTSNITSTRAEDKLIEYDDTVPLTSEGTSEDKSGLEPTPDEQKLELGTSIRKHEFLAESGSEWSRCVITWKAHKKKRSSYVQSSSDPRHNSNGRGNGWA 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 847062 855460 + Cp4.1LG17g01340.1 Cpe17g00136 483454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00136 971 MobiDBLite consensus disorder prediction 945 971 - -
Cpe17g00136 971 Coils Coil 781 801 - -
Cpe17g00136 971 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 363 528 IPR014001 -
Cpe17g00136 971 PANTHER ATP-DEPENDENT HELICASE BRM 27 705 - -
Cpe17g00136 971 Gene3D - 342 584 IPR038718 -
Cpe17g00136 971 PANTHER SNF2/RAD54 HELICASE FAMILY 27 705 - -
Cpe17g00136 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 575 IPR027417 -
Cpe17g00136 971 MobiDBLite consensus disorder prediction 855 918 - -
Cpe17g00136 971 Gene3D - 585 707 IPR027417 -
Cpe17g00136 971 SMART ultradead3 347 539 IPR014001 -
Cpe17g00136 971 MobiDBLite consensus disorder prediction 955 971 - -
Cpe17g00136 971 Coils Coil 152 172 - -
Cpe17g00136 971 Pfam SNF2-related domain 354 639 IPR000330 GO:0005524|GO:0140658
Cpe17g00136 971 CDD SF2_C_SNF 650 705 - -
Cpe17g00136 971 PANTHER ATP-DEPENDENT HELICASE BRM 706 909 - -
Cpe17g00136 971 SMART SnAC_2 783 845 IPR029295 GO:0042393
Cpe17g00136 971 Pfam Snf2-ATP coupling, chromatin remodelling complex 784 845 IPR029295 GO:0042393
Cpe17g00136 971 MobiDBLite consensus disorder prediction 867 882 - -
Cpe17g00136 971 PANTHER SNF2/RAD54 HELICASE FAMILY 706 909 - -
Cpe17g00136 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 577 705 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00136 - - - cmax:111494329 1386.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00211 Cpe17g00136 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01736 Cpe-Chr3:13155230 Cpe17g00136 Cpe-Chr17:847062 1.00E-128 dispersed
Cpe08g00544 Cpe-Chr8:3554800 Cpe17g00136 Cpe-Chr17:847062 7.46E-06 dispersed
Cpe17g00136 Cpe-Chr17:847062 Cpe19g01203 Cpe-Chr19:8078742 3.26E-72 dispersed
Cpe12g00211 Cpe-Chr12:1377213 Cpe17g00136 Cpe-Chr17:847062 5.21E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007862 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50771 PF00176 SNF2_N 4.00E-69 CL0023 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00136 Cpe_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0