Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00137 ATGCCTTCCTCTTCCCCAACTCCACTTGCTTCCATATTCCTTTCTTGCATCTTGAACAGAAGACTCATTCCTGTTCGAAATTCTTCAATCAAGTTCTCTCTCAACTCTCCCATGGCGATTTCTTCGTCCGCCATGGCTCTTTTCCTCTTCCTTCTCCTGTGCTTTTCCTTCTTTTCGCTGTCTCATTCCCTCAGAGGCTTTTTTATCGATTGCGGCTCCACTTCTCCGACCACTCACGGTGGCCGCACCTGGCAATCCGATGACGGCTTCGTCTTTAGTGGAATCAACAAGAATGTCACCGGTCCCGTTCTTGACCCTACGCTTTCCACTGTGCGCTCCTTTCCTAGGGTTCTTAATCGTAAATTCTGCTATGTTGTTGGACCGGTTTTTCGTACCCGGAGGTATATGGTTAGAACGACTTACTACTATGGCGGAGTCAACGGCCTTGATTCGCCGCCGGTTTTCGATCAGATTGTTGATGGGACTGTTTGGAGCATGGTGAATACTACTGAGGATTATGCTCTGGGATTGACGTCCTATTACGAGGGGATTTTTGAGGCGAAGGCGAGGTCGATAACTGTGTGCATTGGTTCCAATATGCATCCAGACGATCAATTTGATCGATTTTGGCAACCATTTGGGAATAGCAGTGGGAACGTAACCAGTAGAACTGTATCTGCCTCTGGTATATGGAATCTCCCTCCATCAAAGATATTTGAAACAGAGCTGAAGACTGATAAACTGGAACCATTGGAGCTGAACTGGCCTCCTATTTCTCTTCCAGGACCAGAAAGCAATTTCACTTATTACATTGCGCTGTACTTTGCTAATGATCATGCTTCATCATCCGATAATTTGAGAGTGTTTAACATAAGTGTGAATGGTATAAAATATTACGGCGATCTAAACGCATCTTCAGCCGGTCATGTCGTTTTTGCTAGTCAGTGGCCTCTTCATGGTCTAACAAATATTACGTTGACTCCCTCTCCTCTGTCAAAACTTGGTCCATTGATCAACGGTGGGGAACTTTTTCACCTTGTGTCTCTTGGAGAAAGAACTCATGCAAAAGATGTTGTCAATCTGGAGAGAGTAAAAGAAAGTCTGAAAAATCCACCACCTGATTGGAATGGCGATCCATGCTTCCCCCATGAATATCGCTGGACAGGAATTACATGTTCTGGTGGCTCTCGAAATCGAGTGGTTACCTTAAACCTTACAAATATGGACCTTTCAGGATCCTTATCACCAAGCATTGCCAATCTTACTGCGTTGTCGGGAATCTGGCTTGGAAACAACAGTTTGTCTGGAACGATTCCTGACCTCAGTCCTCTGAAGTTGTTGGAAATAGTGCATTTGCAAGAAAATAATTTCAGTGGAGAGATTCCATTGTCACTTGGAAACATACCACGCTTGCGGGAACTGTTCTTATACAACAATAATTTGGCCGGTGAAGTTCCTCAAAGTCTTCTTAATAAACAACTGAATCTAAGGCTTTTTCCGGGGAACCATCTGTTGGCGCCACCACCTCCTGCTTAG 1536 44.79 MPSSSPTPLASIFLSCILNRRLIPVRNSSIKFSLNSPMAISSSAMALFLFLLLCFSFFSLSHSLRGFFIDCGSTSPTTHGGRTWQSDDGFVFSGINKNVTGPVLDPTLSTVRSFPRVLNRKFCYVVGPVFRTRRYMVRTTYYYGGVNGLDSPPVFDQIVDGTVWSMVNTTEDYALGLTSYYEGIFEAKARSITVCIGSNMHPDDQFDRFWQPFGNSSGNVTSRTVSASGIWNLPPSKIFETELKTDKLEPLELNWPPISLPGPESNFTYYIALYFANDHASSSDNLRVFNISVNGIKYYGDLNASSAGHVVFASQWPLHGLTNITLTPSPLSKLGPLINGGELFHLVSLGERTHAKDVVNLERVKESLKNPPPDWNGDPCFPHEYRWTGITCSGGSRNRVVTLNLTNMDLSGSLSPSIANLTALSGIWLGNNSLSGTIPDLSPLKLLEIVHLQENNFSGEIPLSLGNIPRLRELFLYNNNLAGEVPQSLLNKQLNLRLFPGNHLLAPPPPA 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 856939 864175 + Cp4.1LG17g01330.1 Cpe17g00137 483455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00137 511 PANTHER BNAANNG03040D PROTEIN 200 492 - -
Cpe17g00137 511 SUPERFAMILY L domain-like 379 491 - -
Cpe17g00137 511 Gene3D - 192 342 - -
Cpe17g00137 511 PANTHER BNAANNG03040D PROTEIN 51 198 - -
Cpe17g00137 511 Pfam Malectin-like domain 201 345 IPR024788 -
Cpe17g00137 511 Pfam Malectin-like domain 69 197 IPR024788 -
Cpe17g00137 511 PANTHER OS07G0107800 PROTEIN-RELATED 200 492 - -
Cpe17g00137 511 PANTHER OS07G0107800 PROTEIN-RELATED 51 198 - -
Cpe17g00137 511 Gene3D Ribonuclease Inhibitor 357 509 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00137 - - - cmax:111494330 968.378
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00829 Cpe-Chr9:7651517 Cpe17g00137 Cpe-Chr17:856939 9.77E-35 dispersed
Cpe17g00137 Cpe-Chr17:856939 Cpe17g00523 Cpe-Chr17:4354724 8.11E-33 dispersed
Cpe15g00491 Cpe-Chr15:5885705 Cpe17g00137 Cpe-Chr17:856939 9.94E-98 transposed
Cpe12g00210 Cpe-Chr12:1374142 Cpe17g00137 Cpe-Chr17:856939 4.62E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g465 . . . . . Bpe14g01176 . . Cmo08g01131 . . . . . . . . . . . . . . . Cla06g00563 Cam06g0603 Cec06g0603 Cco06g0608 Clacu06g0589 Cmu06g0584 Cre06g1350 . . Cone7ag0236 Cone4ag0226 . . . . Blo02g00551 . . Bda13g00134 . . . . . . . Cma08g01159 . Car08g01036 . . Cpe17g00137 Bhi12g01823 . . . Hepe03g0115 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008562 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 6 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00137 Cpe_Chr17 FPKM 46.176281 54.934513 58.25552 60.718971 68.044281 66.829674 69.023811 68.227959 59.077538 59.534027