Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00140 ATGTCTCGTGTTCGGAATTTCAGTTATCAAGGAGGGATGACTTATGATGAGTACTGGGCCACTTTGAATAGATATGATTTCAAAGACCACCATCAAATGACAAGTAGGAGCAATTATTATGATAATGGCTATTGCAACCATTTTGAATTCTCAGGGCAGTATAAAGAGCAGGTTAATAGGTCTATTTATGCGAGGACTGATACTTTGAACACCATCAAGTCTCATAATTCTCAGTCTTTTAAAAGGAGGAAGTTTTCTGCTTCACGTTGGGAGGATAGTGGGAAATACCATTGGCAGGCGAGGGCGTATGTTAATGGACCTTCAATCTATAGCAATTTGGTCCATCCTCCTCCAAGATCCAACAACGATGTCTCTACGTCTGCCAGCTGTAAACGCAGCCGCTCAATAATGGAAGAGGATGAGCCTTTCTTTATGACCAGGGATGAGATTGAGAGATGTTCACCTTCAAGAAAAGATGGTATTGATACAGTACGTGAAACACATCTGCGGTACACATACTGTGCCTTCCTTCAGAGTCTAGGTTTGCAGCTTGAGTTACCACAGACTACCATTGGCACTGCAATGATTCTATGCCATCGGTTTTTTATTCGAAGGTCACACGCTTGTCATGATAGATTTTTGATTGCCACATCTGCACTCTTCCTTGCTGCAAAATCTGAGGAGACACCACGCCCTCTGAATAATGTCTTGCGAGCTTCGTGCCAAATTCTACACAAACAGGATTTTAATGTCTTATCTTATATGCTCCCTGTTGATTGGTTTGAGCAATATCGTGAAAGAGTAACTGAGGCTGAACAATTGATACTGACTACACTGAACTTTGAACTCAACGTACAACATCCCTATGCTCCTCTTATGTCTGTTCTTAACAAGATAGGTCTTTCACAGTCGATCTTGGTGAACCTTGCACTGAACTTAATCAGTGAAGGGAAGCTTCTTGGCTTGTGTAGTCTATTAGTAAGCATGCCCTTGCAATTGCGAAAAAATTTCTTGAATTTTGGCATTGATTGTGGCATGAAAGAGGTTGTGCTGGTGATCTTCTTTCCTTCTAGTTGTATATTTAGAGCTGATGCACTTTTTTTTCTTGAAGTACTGTTACACATTGCCTTCCTCTTTAGTAGTGGACCCAGATGGCTGAGGAGCTCACTCTGGCTTCAGTTTAAGCCCCATCAGATAGCTGCTGGAGCTGCATATCTGTCTGCCAAGCTATTGAATATGGATTTTGCTCCTTATCAAAATATCTTGCAAGAGTTCCAAGCTACGCCAGCTATTCTCCAAGATGTGGCCCAGCAGTTGATGGAGCTGTTCTAA 1332 41.89 MSRVRNFSYQGGMTYDEYWATLNRYDFKDHHQMTSRSNYYDNGYCNHFEFSGQYKEQVNRSIYARTDTLNTIKSHNSQSFKRRKFSASRWEDSGKYHWQARAYVNGPSIYSNLVHPPPRSNNDVSTSASCKRSRSIMEEDEPFFMTRDEIERCSPSRKDGIDTVRETHLRYTYCAFLQSLGLQLELPQTTIGTAMILCHRFFIRRSHACHDRFLIATSALFLAAKSEETPRPLNNVLRASCQILHKQDFNVLSYMLPVDWFEQYRERVTEAEQLILTTLNFELNVQHPYAPLMSVLNKIGLSQSILVNLALNLISEGKLLGLCSLLVSMPLQLRKNFLNFGIDCGMKEVVLVIFFPSSCIFRADALFFLEVLLHIAFLFSSGPRWLRSSLWLQFKPHQIAAGAAYLSAKLLNMDFAPYQNILQEFQATPAILQDVAQQLMELF 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 872038 880114 + Cp4.1LG17g01380.1 Cpe17g00140 483458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00140 443 Pfam Cyclin, N-terminal domain 154 284 IPR006671 -
Cpe17g00140 443 SUPERFAMILY Cyclin-like 143 285 IPR036915 -
Cpe17g00140 443 SMART cyclin_7 175 277 IPR013763 -
Cpe17g00140 443 CDD CYCLIN 169 247 IPR013763 -
Cpe17g00140 443 PANTHER CYCLIN 70 443 IPR043198 GO:0006357|GO:0016538
Cpe17g00140 443 PANTHER CYCLIN-T1-4-LIKE ISOFORM X1 70 443 - -
Cpe17g00140 443 Gene3D - 131 283 - -
Cpe17g00140 443 Gene3D - 285 443 - -
Cpe17g00140 443 SUPERFAMILY Cyclin-like 385 443 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00140 K15188 CCNT; cyclin T - csv:101216477 590.112
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00140 Cpe-Chr17:872038 Cpe20g00592 Cpe-Chr20:3612268 4.22E-53 dispersed
Cpe12g00207 Cpe-Chr12:1352955 Cpe17g00140 Cpe-Chr17:872038 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g468 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed04g1886 . . . Cma17g00250 . . . Cpe17g00140 Bhi12g01731 Tan06g2538 Cmetu05g0588 . Hepe03g0182 . Lcy13g0265 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006517 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00140 Cpe_Chr17 FPKM 0.0 0.0 0.075626 0.559232 0.622243 1.083542 1.108934 0.883555 0.051874 0.589305