Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00145 TTCTCTCATCCTTTCGACCCGCTATCTCCGCTCGAGATTCAAATCGTCACCTCCACAATCAAATCCAATTTCAACCTGACTTCGAGGCTCACTTTTCACTACGTTGGCATTCACGAGCCTAACAAACATGACGTCCTGTTATGGCTTGCAAATCCTCGATCTCCGCCATTGCCACGAGAAGCCTTTGTTGTGGCACGCGCTAACAAGCAGACTCATGAGTTCTTGGTGAGTATAGCGGATGGTCGTGGCACGATTGTGTCACAGAGTGTGTACCGAGGGTCCGGTTTCCCAACGTTAACCTTTGAGGAACAAACGGAAGCTATTGATTTGGCTCTCAAATACCCATCAGTTGTATCCTCCATGGAGAAGAGAGGGCTGAATGTTTCGAATGTTGTGGGCTCGGTTTTTACTATTGGGTGGTTTGGGCAGGCCCACAATGAGACGCAACGAGTGGTCAAGGTTCTGTTTTTTTACAAGGAGTCTACGGTCAATGTTTGGGTAAGGCCCGTTGAGGGCGTTGAAACAGTGGTGGATCTTGATCAAATGGTGGTCACCGAATTTCAAGACGTTCAACGTTGTGTCTTGCCAAAGAGCGAGGGGACGGATTACCGTGCCTCCGGTATGCGGCCGCCGTTTGTGGCGGAGACTAAGCCGATTAACGTCGTCCAACCGCTTGCGTCCATATACGATGTCGACCAACGTAAAAAACGACAAGTTCTTTACCAAGGCAGCCTCTCCGAGCTTTTTGTGCCGTACCAAGATCCAACGGAGGAGTGGTATTACCGGACGTTTATGGACGCCGGAGAGTTTGGGATGGGGTCAGCGGCGGTGGAGCTTGAACCCCACCATGATTGTCCGTCCAACGCCGTCTTCTTCGACGCCTTCCACGGCGGCCAAGATGGAAACCCTGTCAAGTTGACCAATGCTTACTGTATGTTTGAGAAGTACGCCGGTAACATTGCTTGGCGCCACACTGAGAGCGCAATTCCAGGAGAATTGATAAGAGAAGTTGGGCGGGACGTGAGCTTGGTGATAAGGACGATCACGGAGGAAATCTACGGCTTATTAGTAGCTCAAAACACGATCGGCATAAACCACGACCATTTCCTAACGTATTATCTTGATCTCGACATCGATGGCCAGGAGAATTCTTTTGTGAAAGGCAAATTGACGAGCTTTAAAACCGACGGCTCCACGCCGAGGAAGAGTTACTGGTCCGTGGTGAGAGAGGAGGCGAAGAAGGAGCTGGATGCTAGAAACCTTCCGAACGAGCCAGTAGAGCTCTACATCGTCAACCCAAACAAAGAAACTACAATAGGGAACCAAGTCGGGTACCGTTTAATTCCAGGACCAATGCCCCGACCACTACTTTTGGAGGACGATTATCCGCAGCGGCGAGGAGCATTATGTGACCATAATGTATGGATCACGCCGTATAATCGATCGGAGAAATGGGCCGGCGGTATGTACGTCGATCGTGGCCATGGTGATGAAACTCTTAACATTATAACACAAAGGAATAGGGACATCTGGAACAAGGACATAGTGTTATGGCACACAATAGGGTTCCACCACCATCCGAGTCAAGATGAATTTCCAATAATGCCCACGCTCTCTGGAGGATTCGAACTCCGGCCTACAAATTTCTTTGAAAGAAACCCAATTCTCAAAATGAAGGCCCCCTAA 1686 49.53 FSHPFDPLSPLEIQIVTSTIKSNFNLTSRLTFHYVGIHEPNKHDVLLWLANPRSPPLPREAFVVARANKQTHEFLVSIADGRGTIVSQSVYRGSGFPTLTFEEQTEAIDLALKYPSVVSSMEKRGLNVSNVVGSVFTIGWFGQAHNETQRVVKVLFFYKESTVNVWVRPVEGVETVVDLDQMVVTEFQDVQRCVLPKSEGTDYRASGMRPPFVAETKPINVVQPLASIYDVDQRKKRQVLYQGSLSELFVPYQDPTEEWYYRTFMDAGEFGMGSAAVELEPHHDCPSNAVFFDAFHGGQDGNPVKLTNAYCMFEKYAGNIAWRHTESAIPGELIREVGRDVSLVIRTITEEIYGLLVAQNTIGINHDHFLTYYLDLDIDGQENSFVKGKLTSFKTDGSTPRKSYWSVVREEAKKELDARNLPNEPVELYIVNPNKETTIGNQVGYRLIPGPMPRPLLLEDDYPQRRGALCDHNVWITPYNRSEKWAGGMYVDRGHGDETLNIITQRNRDIWNKDIVLWHTIGFHHHPSQDEFPIMPTLSGGFELRPTNFFERNPILKMKAP 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 927736 931812 + Cp4.1LG17g01490.1 Cpe17g00145 483463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00145 561 Pfam Copper amine oxidase, enzyme domain 227 349 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cpe17g00145 561 Pfam Copper amine oxidase, enzyme domain 352 555 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cpe17g00145 561 SUPERFAMILY Amine oxidase N-terminal region 95 204 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cpe17g00145 561 SUPERFAMILY Amine oxidase N-terminal region 2 88 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cpe17g00145 561 Pfam Copper amine oxidase, N3 domain 97 192 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cpe17g00145 561 Pfam Copper amine oxidase, N2 domain 3 81 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cpe17g00145 561 PANTHER COPPER AMINE OXIDASE 225 350 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cpe17g00145 561 Gene3D - 1 97 - -
Cpe17g00145 561 PANTHER AMINE OXIDASE 225 350 - -
Cpe17g00145 561 Gene3D Copper amine oxidase, catalytic domain 351 561 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cpe17g00145 561 Gene3D Copper amine oxidase, catalytic domain 221 350 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cpe17g00145 561 SUPERFAMILY Amine oxidase catalytic domain 209 558 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cpe17g00145 561 Gene3D - 98 192 - -
Cpe17g00145 561 PANTHER AMINE OXIDASE 2 224 - -
Cpe17g00145 561 PANTHER COPPER AMINE OXIDASE 2 224 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cpe17g00145 561 PANTHER COPPER AMINE OXIDASE 348 561 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cpe17g00145 561 PANTHER AMINE OXIDASE 348 561 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00145 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - csv:101222468 909.442
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00288 Cpe-Chr5:1623207 Cpe17g00145 Cpe-Chr17:927736 7.00E-144 dispersed
Cpe17g00145 Cpe-Chr17:927736 Cpe18g00864 Cpe-Chr18:7929019 1.19E-51 dispersed
Cpe12g00201 Cpe-Chr12:1281573 Cpe17g00145 Cpe-Chr17:927736 7.37E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g482 . . . . . . Bma04g00787 . . Cmo17g00226 . . . . . . . . . . . . . . Cla06g00578 Cam06g0616 Cec06g0617 Cco06g0623 Clacu06g0603 Cmu06g0596 Cre06g1365 . . . . . . Chy05g00402 . . . . . . . . . Sed04g1901 . . . Cma17g00240 . . . Cpe17g00145 Bhi12g01715 Tan06g2526 Cmetu05g0015 Lac12g2287 Hepe03g0192 . Lcy13g0277 . . . . . . . Lsi09g01325 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00145 Cpe_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0