Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00146 ATGAATGGTGAAACAACCTCTGATTATGTCGAAGTTGATCCCACAGGAAGATATGGAAGATACGATGAAGTTCTTGGCAAAGGAGCTTCGAAGACAGTTTACAGAGCCTTTGATGAATACGACGGCATTGAAGTGGCGTGGAATCAAGTGAAGCTTTGTGATTTTCTTCAAACTCCCGAAGATCTCGAACGGCTATACAGAGAAATCCATTTGTTGAAGACTCTTAAACACAAAAACATAATGAAATTTTGTTCTTCTTGGGTTGACACTGCGAATAGAAACATTAACTTTGTGACAGAGATGTTCACTTCTGGAACTCTTAGACAATACAGGCTGAAGCACAAGAGAGTAAACATCAGAGCTGTGAAGCATTGGTGCAGACAGATTTTAAGAGGGCTTCTTTATCTTCATAGCCATGAGCCTCCTTGCTCTCATGAACATGGCTGTGCTTCCATCCATGGCCGTTTTGAAGAGATCACATATCAAGTCGAAGGGTCGGAACAGTTCAATGGAGAAGAGGATTCGAGCGATATCCATTATGCCGATATTTGGGCGCAACGAGATGGACCGGAGGTTGTTTCACATGAACATGGAGAAGTTAGTTGCAAGGAACGACATGGAATGTCGGAGCAGCCGAAACTTAGAACAGAATTCGAAACGAGAAACTCTAGCTCGTTGAATCATTCGATGTCGTTCACCGATGATCACGAGAACGAAATTCGACAAGAACTCAGATGGCTCAAGGCTAAGTATCAAATGCAGTTGAGGGAGCTAAGAGATCGACAGTTAGGAGTCAAAACGAAATCCGTTAGCTTGCACCCGAATCCCAACCTCGCCGAGATCGACATTGGGAAGGACATTGCTTCACGTTCCCTCCATGTTGCTGATAACATGTCGGAAAACCAGACATTTCGAGACGAGAACGTTGTGGACGAGTCGAGTATTCCCGAGCTGATGTTTACGGGCAAGAGTTTCTATACGGGAGCGTTGGTGCCTCATTCTCTACAAAGGGCAACTTCCCTTCCTGTTGATGCCATTGATTTTTAG 1047 44.32 MNGETTSDYVEVDPTGRYGRYDEVLGKGASKTVYRAFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLKHKNIMKFCSSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLLYLHSHEPPCSHEHGCASIHGRFEEITYQVEGSEQFNGEEDSSDIHYADIWAQRDGPEVVSHEHGEVSCKERHGMSEQPKLRTEFETRNSSSLNHSMSFTDDHENEIRQELRWLKAKYQMQLRELRDRQLGVKTKSVSLHPNPNLAEIDIGKDIASRSLHVADNMSENQTFRDENVVDESSIPELMFTGKSFYTGALVPHSLQRATSLPVDAIDF 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 934227 937168 + Cp4.1LG17g01500.1 Cpe17g00146 483464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00146 348 Pfam Protein kinase domain 22 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00146 348 Gene3D Phosphorylase Kinase; domain 1 3 100 - -
Cpe17g00146 348 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 145 301 - -
Cpe17g00146 348 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 145 - -
Cpe17g00146 348 Gene3D Transferase(Phosphotransferase) domain 1 102 151 - -
Cpe17g00146 348 SUPERFAMILY Protein kinase-like (PK-like) 13 145 IPR011009 -
Cpe17g00146 348 ProSiteProfiles Protein kinase domain profile. 19 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00146 348 Coils Coil 241 261 - -
Cpe17g00146 348 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 145 301 - -
Cpe17g00146 348 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 5 145 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00200 Cpe17g00146 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00146 Cpe-Chr17:934227 Cpe20g00266 Cpe-Chr20:1491133 1.19E-72 dispersed
Cpe12g00200 Cpe-Chr12:1274157 Cpe17g00146 Cpe-Chr17:934227 1.68E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62929 PF00069 Pkinase 2.40E-17 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00146 K08867 - csv:101210511 280.796