Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00147 ATGGAGGACGGTGTGAGATCTGGGGGACCATCGGGGATTTTGGTGAAGACTCGGAACTCGTCCGGTTGCTTAATTGTTAGAAAGAAAGAGGATGGATTAGGGGGCGCCGGTTCTTCGGCCTCACGCTTGCTTCATGCGAAGAAGGAGAAGAAGAGGCCTAGGTTGGTTTTGAGTGATTCTGGGTCCAGTGATGAGGTATTGCTGCCCCATCGTAGACGAGTTGATCCTGAAACCATTCGGGTTTGTAATGGTTTGAATTCTTTTGAAAAGGATGATATGGACGAGAGGGGAAGCATCCGAAAGAAGGATAGGTTGCAGTATGTTAAGCGGAATGATGATGTTCTGCTCAACAGGATGGATGTGGATGGTTTAGGAAGAAATATGGGCACCTTAGATGTCTTTGATTTCAACGAGTACGATGACCTCGACGGTGAGATTGAGCAGAGGAAGCATGTTAACGGCAGTGGAGAAAAGCGGTTTCTTGGTTCCATGAACCTGCCTCAACGTGAAATCAAGAGGGAATTTGGAACCACTTCTAGTAGGCATGCTTTGGTGGACAAGAGAAAGAATTTGTATGCAGAAAAAACCAATACCTTTGATCGAGACAGGCCTACCCGAAAGATTAACTTCGACACAGATAGTGATGGAGCTTATGTCCCAACACCCTTGTTAAGGGATAAGTTTAGGGGTCATTCTGATGAAGCAATAAGGGTTCAGGGTAAAAATGGAGTTTTAAAGGTCATGGTAAAAAAGAAGAAGAATGTGAGTGAAACTTCGGATATGTATGATCATCGCAAATTAGAAGAAAGTAGAAAGACTCTAAGGACTGAAGATACTCCGAAGAGGAAAGTGTTAGTTGCTCCTTCAGTTTACCCAGAAACTAAACCCCATGTGAAACAGAATCCCTTTCCTAAGCCAGAGAAGGACCATGCTGATTTTCAAACATCAGCATCAACAAAAAATGGAAAGGGTTGCAGTTGGGATTCAGGTGATAGCGGTGTATCATTGAAGCCCAGAAAAAAGGTTGTTGAAGCTCAGAAATCTACCAAGAGGGCAAGCTCTGAAGTTGAAAAAATTCCATGTGAAGAGACTCCCCCAAGTACAGCAAAGGAAGGAAAAGCAAAACGAGGCAGTGGAACTGAGAAACAAAAGCTACGTGAAAGGATCAGGGGAATGCTCCTTAGTTCTGGCTGGAAAATCGATTACAGACCTAGAAGGAATAGAGATTATTTAGATGCTGTCTATGTTAATCCAACTGGAACAGCATATTGGTCAATTATTAAGGCTTATGATGCCCTTCAAAAGCAATTAAATGAAGAAGGAGCAGAGGCTAAACCCAGTGCTGATGCTTCCTTTACCCCAATATCAGATGATATTCTCAGTCAATTAACCAGGAAAACTCGAAAGAAAATTGAGAAAGAATGGAAAAGTAAGCAGAGAGATGAAAGTGACAGTGAAAATGCCAAAGAAGCAAGTGCACTGAGATCTGCTGGTACTAAAAATGACGTGGACAGCATGGATAGTGATAGCAACGAAGAAAAATTAAGCTCTTTCATAAAGCAGGGTGGGAAATCTATTAAAAAGAAATTGAACGAGAATGGATTTCCTAGTGTTGACTCAAAAGGTCAAAGTTCTAGTAAGTATTCACGTGATGCCACTGCAAAACCTTCTTCTGGATTCAGTTCACGTATTTTACATGGAAGAAAAGGTAGAAAGCTTGGATTGTTAGTTCGTCGCTCTAGTAAGGGATTAGATTCAGAGAATGATGGTTTTATTCCATATACTGGTAAAAGGACTCTGCTGTCCTGGCTTATCGATTCTGGGACTGTGCAGTTGAGCCAAAAGGTTCGTTATATGAACCGTAGACAGACCCGAGTGATGCTGGAGGGGTGGATTACCAGAGACGGCATTCATTGTGGTTGCTGCAGCAAAATCCTCACTGTTTCAAAGTTTGAGATACACGCTGGAAGCAAACTACGGCAACCTTTTCAAAACATCTTTCTGGAATCCGGGATTTCTCTTCTGCAATGCCAGATAGATGCTTGGAACAGACAGGAGGAATCTAAACGTCTCAGTTTCCACACAGTTGAAATTGAAGGTGACGATCCGAATGATGATACTTGTGGCATCTGTGGAGATGGTGGCGACTTGATCTGTTGTGATGGGTGTCCATCAACTTTTCATCAGAGTTGTTTAGACATTCAGATTCCTCCGGGTGATTGGCACTGCCCAAATTGTACATGCAAGTACTGTGGAGTTGCTAGTGTTGATACTTCTCATGAAAACACTACCAATGTTCTTGAGATATCTAGTTGCATGTTATGCGAGAAAAAATTTCATGAATCGTGCATCCCGGAAATGGATACTCATTCCAATGGTTCAGTCACTTCTTTTTGTGGCAAGAATTGCAGAGAGGCTACTACAATTGTACTTTTTGTCTGTGCTGGTGATCATATCATGTTGTGGCATAAGCTTTTCGAGAATTTGCAGAAGTTTCTTGGGGTGAAACACGAATTAGATGCAGGGTTCTCATGGTCTCTTGTCCGTAGAACAAGTGAAGATTCAGATTCATCTCTTCGTGGGCATTCACAAAGGATTGAATGCAACTCTAAACTGGCTGTTGCATTAACAGTTATGGATGAATGTTTTTTGTCTATTGTTGACAGGAGGAGTGGGATAAATCTAATTCATAATGTTCTTTACAATATTGGATCAAACTTTTATAGGCTGAATTATAGTGGCTTCTACACTGCTATTTTGGAAAGGGGTGATGAAATCATCTCTGCAGCAACAATCAGGTTTCATGGGACTAAGTTAGCTGAGATGCCATTCATTGGAACCCGTCATATATATAGACGTCAAGGAATGTGCCGTCGTCTTTTTTGTGCAATTGAATCTGCTCTTCGCATGCTTAAGGTTGAGAAACTGATTATACCAGCAATTGCCGAGCTCATGCATACATGGAATGTTATTTTTGGCTTTATCCCTTTGGAGCAATCACTCAAGCAAGAAATGAGATTGATGAATATGCTGGTGTTCCCTGGAACAGATATGTTACAGAAGTTGTTAATCGAAGAGACAATTGTTGAGGAAAATGCTACTACTGCCTCAGGTGCAAAGCAAACGAATTGTAGAAGTACAGAGTTCAGTAGTCCTAAGATGGATGCAGAGACCTCATCTGGACAGGAACCTCAAAGTTGTGATGACACTGAACCGCGCCACTCCAAGAAGACAACAGACGAAGCAGCTGACACTAACCCGGATCCTGAATCCATGCCTGGTTCTCCAAATGATACATCTGTGGTGAATAGTTCTCTGGACGCATCTCGTGAAGTTAAAACTTCTTGCTTTCCAATGGAAACTGAAAATTCAGATTCTGATTCTGGTGATAAATTAGCTGAATGTTCCTCCGATGGGAAATGTTCATCTCCCTCGATGGGCATCTCTCTTCCAACCAAAACTAGGCCTGGAATTCAGCATGTTTCAGAAGACCATTCGCAGTCCACTTCTCAATGTATGGCAGCTGATACTCCTTCAGACAGTTTGCTTGAACCTAAGGTTACAGTTTCAGATGAAGGAATCAGACGTTCGAATTCTCATGCTGGGCACAAGTTGGTTGAATCTGATTCTCAGAAGAAATCTTTCACTTCTACTTTAGACCATGGCACTGATGAGTTTGAAAACAACATACCCGTGATGGATTCTCCTGAATATGACAAGTGTTTGAATAAGATTAATGGTCATGATTTTCGTGAACACAATGCCCATGCTATTTCTTTTAAACCTGCTCATTGGGATGAAAATTTTGCTAATGGCGTTGTCGGTGAAAAGCCACTTGCCTCTTCATCTGGTCTGTGTGGCTCTAATGGACGCCCCTCCGAAACTATATCCGATGATGGAATTTGTGGCAGTGAAAATTCTCCACAGACCTGTGGGGAAAAAGTCAGGTGA 3951 42.09 MEDGVRSGGPSGILVKTRNSSGCLIVRKKEDGLGGAGSSASRLLHAKKEKKRPRLVLSDSGSSDEVLLPHRRRVDPETIRVCNGLNSFEKDDMDERGSIRKKDRLQYVKRNDDVLLNRMDVDGLGRNMGTLDVFDFNEYDDLDGEIEQRKHVNGSGEKRFLGSMNLPQREIKREFGTTSSRHALVDKRKNLYAEKTNTFDRDRPTRKINFDTDSDGAYVPTPLLRDKFRGHSDEAIRVQGKNGVLKVMVKKKKNVSETSDMYDHRKLEESRKTLRTEDTPKRKVLVAPSVYPETKPHVKQNPFPKPEKDHADFQTSASTKNGKGCSWDSGDSGVSLKPRKKVVEAQKSTKRASSEVEKIPCEETPPSTAKEGKAKRGSGTEKQKLRERIRGMLLSSGWKIDYRPRRNRDYLDAVYVNPTGTAYWSIIKAYDALQKQLNEEGAEAKPSADASFTPISDDILSQLTRKTRKKIEKEWKSKQRDESDSENAKEASALRSAGTKNDVDSMDSDSNEEKLSSFIKQGGKSIKKKLNENGFPSVDSKGQSSSKYSRDATAKPSSGFSSRILHGRKGRKLGLLVRRSSKGLDSENDGFIPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGISLLQCQIDAWNRQEESKRLSFHTVEIEGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQIPPGDWHCPNCTCKYCGVASVDTSHENTTNVLEISSCMLCEKKFHESCIPEMDTHSNGSVTSFCGKNCREATTIVLFVCAGDHIMLWHKLFENLQKFLGVKHELDAGFSWSLVRRTSEDSDSSLRGHSQRIECNSKLAVALTVMDECFLSIVDRRSGINLIHNVLYNIGSNFYRLNYSGFYTAILERGDEIISAATIRFHGTKLAEMPFIGTRHIYRRQGMCRRLFCAIESALRMLKVEKLIIPAIAELMHTWNVIFGFIPLEQSLKQEMRLMNMLVFPGTDMLQKLLIEETIVEENATTASGAKQTNCRSTEFSSPKMDAETSSGQEPQSCDDTEPRHSKKTTDEAADTNPDPESMPGSPNDTSVVNSSLDASREVKTSCFPMETENSDSDSGDKLAECSSDGKCSSPSMGISLPTKTRPGIQHVSEDHSQSTSQCMAADTPSDSLLEPKVTVSDEGIRRSNSHAGHKLVESDSQKKSFTSTLDHGTDEFENNIPVMDSPEYDKCLNKINGHDFREHNAHAISFKPAHWDENFANGVVGEKPLASSSGLCGSNGRPSETISDDGICGSENSPQTCGEKVR 1316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 939351 947509 + Cp4.1LG17g01460.1 Cpe17g00147 483465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00147 1316 Pfam Tify domain binding domain 630 680 IPR032308 -
Cpe17g00147 1316 CDD PHD2_CHD_II 708 746 - -
Cpe17g00147 1316 ProSiteProfiles Zinc finger PHD-type profile. 705 749 IPR019787 -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 529 564 - -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 490 504 - -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 1189 1210 - -
Cpe17g00147 1316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 807 IPR013083 -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 30 61 - -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 1282 1316 - -
Cpe17g00147 1316 SMART PHD_3 707 747 IPR001965 -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 1280 1316 - -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 536 560 - -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 1034 1066 - -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 1067 1084 - -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 471 517 - -
Cpe17g00147 1316 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1223 - -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 334 358 - -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 256 384 - -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 1138 1177 - -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 1090 1123 - -
Cpe17g00147 1316 ProSitePatterns Zinc finger PHD-type signature. 708 746 IPR019786 -
Cpe17g00147 1316 Pfam PHD-finger 708 749 IPR019787 -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 300 314 - -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 368 384 - -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 471 489 - -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 256 282 - -
Cpe17g00147 1316 PANTHER PHD FINGER FAMILY PROTEIN 1 1223 - -
Cpe17g00147 1316 SUPERFAMILY FYVE/PHD zinc finger 696 752 IPR011011 -
Cpe17g00147 1316 MobiDBLite consensus disorder prediction 1034 1231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00147 - - - cmo:103489665 2001.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00199 Cpe17g00147 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00545 Cpe-Chr9:3661149 Cpe17g00147 Cpe-Chr17:939351 3.38E-44 dispersed
Cpe16g00662 Cpe-Chr16:6958523 Cpe17g00147 Cpe-Chr17:939351 1.97E-87 dispersed
Cpe12g01032 Cpe-Chr12:8602945 Cpe17g00147 Cpe-Chr17:939351 0 wgd
Cpe12g00199 Cpe-Chr12:1264968 Cpe17g00147 Cpe-Chr17:939351 0 wgd
Cpe17g00147 Cpe-Chr17:939351 Cpe17g00858 Cpe-Chr17:6657260 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50772 PF16135 TDBD 4.90E-22 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00147 Cpe_Chr17 FPKM 0.925926 0.888068 0.673531 1.242632 1.285234 1.780971 2.957585 0.643533 0.871636 1.001732