Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00154 ATGGGTACCATTGGTGATAATTGGGGTGATGATTGTTCTGTCATCAAAGACAGAGGAGAGATTTCCTACATCGACTATGAAGATGATAAATCTGTTTGCAGCTACAATCCTATTGAGGAAGGTCCAATTATCATTTCAGTGCCATTTGCTTTTGTGAATGGCAAACCACAATCAGTTTTTGTAGGAGAATCAGTGGCAGATGCAATTACGATCAAGAACACCACCGATGAATCGGTGGACCTATGGGCTGTTAATATTTATGCATCCAATCCCGAGAACTCGTTTACGCTCTCTCTAATGGAGCCCCCTTCGGCAAATGCCAACATAGAAGTTGTACAAGCTTTTTTGGAGTCCTTTTCGTTGGAGGATAGAATGATCCATCCGGGCGAGACTCTTACTGTATGGTTGTCTTGCAAACCGAAAGAAATTGGCTTGCACACGACTGTTGTGCATTTTGATGTTGGCAATGAGAGAATAGAACGCGTTTCTTTTCTGTTAGCAGATGATAAGATTTCCCAGTCATTGGCTTCTAGGAAGCCGTATTCAAGAGATAGAAAAAAGAGGCACGAGGTAGCAGACTCTTATATTCCTGGCTCACGTCCCATTAGAACGCAAGGTCGAGGATTCAAAAATTTTCTTCCCCATTATGATATCCCAAGAAGAATTAGAGATGAACTTAACAGAAAGGAGACTCCTAGTGCTGTTAGGGAAGGACTTAAAAGAGATACCTACGTTCCCTACTTTATGACATTGTTGAACATGGAAGAAATACAATTGGAGGAAGACATGAGAGCTTACGATATGGAACGTGTAACTATGAAAAGAAAGGGACATCATTTTTTGTCCCTTGAGGTTCCAGGGCTTGCTGAGAGAAGGCCTTCACTTGTCCATGGAGACTTTATTCTTGCCAAGATGCCTTCTGGACATGCAAATGACACGGTTAACGCTTATCAGGGCTATATTCATCACGTCGAGGCTGATGAGGTTTACCTAAAATTTGCTCCTGAATTTCACGTTAACCATAGAGACTTCAATCTATACAATGTCCAGTTTACCTATAACAGAATTAACATGAGGAGGTTCTATCAGGCTATTGATGCTGCAGATAGTTTGGCTAAGGAGTTTCTATTCCCATATGAGTTTTCAGATAGAAGAGTTATCAAGACTAATCCGCTGGTGCCGATAACTCAAAATATCAACGAGGAACAAATGCGTTGTGTTCAGATGATCCTTGGTTGCAGAGGAGCACCACCTTATTTAGTTCATGGACCTCCTGGTACTGGTAAGACTCAGACCTTGGTGGAAGCTATCCTTCAACTCTACACAACTAGAAAGAATGCTCGTATTCTTGTTTGTGCTCCTTCAAATAGTGCTGCAGATCACATACTGGAGAAACTCCTCAGTGAGGAGGGTGTTGAAATTCGTGATAATGATGTTTTCAGGCTTAATGCAAGCTCACGGCAATATGAGGAAATCAAGCCTGATCACCTTCGTTTTTGTTTCTTTGATGAGCAAATTTTCAAGTGTCCTCCACACAGTGCCCTTGTGCGCTATAGGATTATTGTGTCAACTTATACAAGTACTTCCCTTCTTTATGCAGAAGATATCAAGCGTGGCCACTTCTCTCACATTTTCTTAGATGAAGCTGGCCAAGCTTCAGAGCCAGAAACGATAATTCCTATATCCAACCTCTGTCTTAGGAAAACAGTCGTTGTTCTTGCTGGTGATCCCATGCAATTAGGTCCAGTGATTTACTCTAAAGAAGCAGAAATTTATGGATTGGGTAAATCATATTTGGAAAGGCTTTTTGAATGTGAAAATTACTGCACTGGGGATGAAAACTATGTAATAAAGTTGTTAAGAAACTATAGATGTCATCCGGATATCTTACATCTTCCTTCTACATTGTTCTATGGTGGTGAATTAATTGCATGTAAAGATGAAAAAAGTTTCCTCACGGATTCAGCAGATATCCTTGAAGTACTTCCTAGTAAGGAGTTTCCTGTTCTTTTCTTTGGTATCCAAGGTTGTGATGAGAGGGAAGGCAACAATCCATCATGGTTCAACCGAATTGAGGTTAGCAAGGTGGTAGAGGTCATAAAGAAGCTGACTGCTGGTGGAAATCTGGTCGATGAAAATATTGGGGTCATAACGCCCTATCGACAACAAGTGATTAAAATAAGGAAAGCCCTTGATAGCCTTGATATGGTTGACATAAAGGTTGGTAGTGTAGAACAGTTTCAAGGACAAGAGAAGCAAGTGATTATTGTTTCTACTGTTCGATCAACGATCAAACATAACGAGTTTGACAGAACCTACTGTTTGGGGTTTTTAAGTAATCCAAGAAGGTTTAATGTGGCTATTACCCGGGCGATATCTCTTCTGGTTATAATTGGCAATCCCCATATAATCTATCAGGATGTGTATTGGAGCAAGCTATTATGGCAGTGTGTTGACAAAGATTCATATCAAGGTTGCTCCCTCCCTGAAAGGCAGGATCCCACAGATGAGGAACATCCATGCAATAACGAAGAGGGACCATGTTCAGGATTTGAAGGAGCAGGGAAGAATCATGAGGAACAAAGTTCAGGATTTGAAGGAGCAGGGAAGAATCATGAGGAACAAAGTTCAGGATTTGAAGGAGCTGACCAGAATCAAGATCTGCCGGAGATGGAATTTTCGAGACCGGTTGTTAATGAAGATGAATGGTCTGATGGTTGGAAGTAA 2727 41.11 MGTIGDNWGDDCSVIKDRGEISYIDYEDDKSVCSYNPIEEGPIIISVPFAFVNGKPQSVFVGESVADAITIKNTTDESVDLWAVNIYASNPENSFTLSLMEPPSANANIEVVQAFLESFSLEDRMIHPGETLTVWLSCKPKEIGLHTTVVHFDVGNERIERVSFLLADDKISQSLASRKPYSRDRKKRHEVADSYIPGSRPIRTQGRGFKNFLPHYDIPRRIRDELNRKETPSAVREGLKRDTYVPYFMTLLNMEEIQLEEDMRAYDMERVTMKRKGHHFLSLEVPGLAERRPSLVHGDFILAKMPSGHANDTVNAYQGYIHHVEADEVYLKFAPEFHVNHRDFNLYNVQFTYNRINMRRFYQAIDAADSLAKEFLFPYEFSDRRVIKTNPLVPITQNINEEQMRCVQMILGCRGAPPYLVHGPPGTGKTQTLVEAILQLYTTRKNARILVCAPSNSAADHILEKLLSEEGVEIRDNDVFRLNASSRQYEEIKPDHLRFCFFDEQIFKCPPHSALVRYRIIVSTYTSTSLLYAEDIKRGHFSHIFLDEAGQASEPETIIPISNLCLRKTVVVLAGDPMQLGPVIYSKEAEIYGLGKSYLERLFECENYCTGDENYVIKLLRNYRCHPDILHLPSTLFYGGELIACKDEKSFLTDSADILEVLPSKEFPVLFFGIQGCDEREGNNPSWFNRIEVSKVVEVIKKLTAGGNLVDENIGVITPYRQQVIKIRKALDSLDMVDIKVGSVEQFQGQEKQVIIVSTVRSTIKHNEFDRTYCLGFLSNPRRFNVAITRAISLLVIIGNPHIIYQDVYWSKLLWQCVDKDSYQGCSLPERQDPTDEEHPCNNEEGPCSGFEGAGKNHEEQSSGFEGAGKNHEEQSSGFEGADQNQDLPEMEFSRPVVNEDEWSDGWK 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 984036 988189 - Cp4.1LG17g01540.1 Cpe17g00154 483472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00154 908 Pfam AAA domain 595 801 IPR041679 -
Cpe17g00154 908 Gene3D - 315 609 IPR027417 -
Cpe17g00154 908 Pfam AAA domain 514 587 IPR041677 GO:0004386
Cpe17g00154 908 Pfam AAA domain 399 494 IPR041677 GO:0004386
Cpe17g00154 908 PANTHER RNA HELICASE SDE3-RELATED 5 842 - -
Cpe17g00154 908 MobiDBLite consensus disorder prediction 828 908 - -
Cpe17g00154 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 814 IPR027417 -
Cpe17g00154 908 MobiDBLite consensus disorder prediction 894 908 - -
Cpe17g00154 908 CDD SF1_C_Upf1 625 817 IPR041679 -
Cpe17g00154 908 CDD DEXXQc_Helz-like 400 624 - -
Cpe17g00154 908 Gene3D - 623 829 IPR027417 -
Cpe17g00154 908 PANTHER DNA2/NAM7 HELICASE FAMILY 5 842 IPR045055 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00154 K18422 MOV10; helicase MOV-10 [EC:3.6.4.13] - csv:101209925 1571.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00513 Cpe-Chr13:5250027 Cpe17g00154 Cpe-Chr17:984036 3.05E-51 dispersed
Cpe13g00514 Cpe-Chr13:5255439 Cpe17g00154 Cpe-Chr17:984036 6.04E-52 dispersed
Cpe17g00154 Cpe-Chr17:984036 Cpe14g00898 Cpe-Chr14:7530962 8.33E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g530 . Blo12g00334 Bda03g00877 . Bpe04g00822 . Bma04g00775 . Cmo08g01110 . . . . . . . . . . . . . . . Cla06g00598 Cam06g0637 Cec06g0640 Cco06g0643 Clacu06g0623 Cmu06g0616 Cre06g1384 Cone14ag0862 . . . . . . . . . . . . . . . . . . Cma08g01136 . Car08g01018 . . Cpe17g00154 . . . . . . . . . . . . . . Lsi09g01306 . . Cme01g01579
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009068 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00154 Cpe_Chr17 FPKM 0.649521 0.0 0.277033 0.0 3.414648 2.519063 4.28849 0.348871 0.450142 0.366793