Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00164 ATGAGTGCCGGCGCGGCGACGTTCCGGTCTATACTCGACAAACCCCTAAACCAGCTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGACTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCTTCGTGGAACAAATCTCAGGCGATCCAGCAGGTTATTTGTTTGAAAGCATTGCTTGAACCTTGTGATGATTCCGGCGCCAGTGCTCTCAGGAAGGTCGCCGTTTCGCCTCGGGTGAATTCAAATCAAGGCGGTTCACCCAGGGATCCGAGTGATGATGCTCAGGTTACGATATCAGTTGATGAATCTGCGTATAGCAATATGGAGACTGCAAAATCTACTCCTGAGGATCCACCGGCTGAACCAGACAACAAGGTCACTAGTCCCAGAGATCAATGTGATACAAATGGAATGGATGGCCAAATGACAATTTTCTATTGTGGCAAGGTGAATGTGTATGATGGAGTTCCAGCAGATAAGGCATGGGCAATCATGCATCTAGCAGCTAGTCCAGTTCATTTCCCTCAGAATCACACCATGGGTGGAACTGCTTCATGTCAGTCTCCACCATGTCTTTTGCAGAATGCCAATGAGAGAGATGACTTTTTTCCTCCTAGTGGTACTATCTATCGGAATGTGCATACAGAGAAGATGGTTGAGTACCCTCAGCAGCAGCAGCATATAAAAGGAACCAGTACTCGAGATTCTGATATTGAGGGTCAGGCGAGTCGGAAAGTTTCGTTACAGAGATATCTTGAAAAGCGAAAAGACAGGGGAAGGTTAAAGAACAAGAAAAATACAGGATTGGCTTCTTCTAGCCTGGAGGGGTATATGAACCATCAAATGAGGACGCATATATCCAATAAGAATTTAGGTCAGATTGTGACAAGCTCTTTATCCCCAACTGGAGTAGCAAAAGCCTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGCTTCCCTGTCGACCTTAATGTCAAAGTTCGACCGGGAGTCTCTGCTCCTTCCGCCGGCCATTGCCCTCAAATTTGGAGTCCGGTGGTTCATCGGAGCACGTGCTTGACGATTCAACTCTGTGAACAAGTTCAGAGAGCTCGTTCAAGAATGGCCGTTGAGGCTTGGTACATGAACGATAGCAATGAAGACCAGAGGCTTCCTCTTCATCGCAACCTTAAAGAGATTTACTTGATATATGCACACAGAAACTTGGTGATTATGAAGAAATTCGTTACACTTTGGATGGAACTGACCATCTATTCGAAGATTGTTATTCATTTAATGAGGCTGTTCCAGGGAGAGCCAATTTGGACCCCGTTTAACCGACCACAAGGGCAGCATCCAGCAAGGAAAGAGTACCTCAATACCTTCACTGAGAAAGCTGGAGCGCCACTCCAACTTCTAAAGTTGCAGGGCTCTTGGAGATCAGAGACTCGTTTATCACTGGAAAATGTAGGAAAGTTTGTTGCCACAAAGCAAATCTCTGAATTTTGTCAGTCAGCAACTGCTGGAGTTGGATTCTATTACTGCGAGGACCTATTTGCTTGGATCAAGCAGAAGATCATGAAAACACACCTGGGATGGGAACAATATCATTGCCCTGAAGGAGCAGCCAAGCTAAAGCCAGCTGAACTGGGGTATAACCATGCTTCACAGCTACATCAGCAAGCCTTTGTAGATAAGTTCATTCTGTTCCAAATTCTTCTTGCTGAACCTTGA 1728 46.01 MSAGAATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVICLKALLEPCDDSGASALRKVAVSPRVNSNQGGSPRDPSDDAQVTISVDESAYSNMETAKSTPEDPPAEPDNKVTSPRDQCDTNGMDGQMTIFYCGKVNVYDGVPADKAWAIMHLAASPVHFPQNHTMGGTASCQSPPCLLQNANERDDFFPPSGTIYRNVHTEKMVEYPQQQQHIKGTSTRDSDIEGQASRKVSLQRYLEKRKDRGRLKNKKNTGLASSSLEGYMNHQMRTHISNKNLGQIVTSSLSPTGVAKAFVGTADNQPKLACFPVDLNVKVRPGVSAPSAGHCPQIWSPVVHRSTCLTIQLCEQVQRARSRMAVEAWYMNDSNEDQRLPLHRNLKEIYLIYAHRNLVIMKKFVTLWMELTIYSKIVIHLMRLFQGEPIWTPFNRPQGQHPARKEYLNTFTEKAGAPLQLLKLQGSWRSETRLSLENVGKFVATKQISEFCQSATAGVGFYYCEDLFAWIKQKIMKTHLGWEQYHCPEGAAKLKPAELGYNHASQLHQQAFVDKFILFQILLAEP 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1038124 1045265 + Cp4.1LG17g01670.1 Cpe17g00164 483482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00164 575 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 4 305 IPR040390 -
Cpe17g00164 575 MobiDBLite consensus disorder prediction 224 248 - -
Cpe17g00164 575 Pfam tify domain 144 172 IPR010399 -
Cpe17g00164 575 MobiDBLite consensus disorder prediction 110 138 - -
Cpe17g00164 575 Pfam Jas motif 244 261 IPR018467 -
Cpe17g00164 575 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Cpe17g00164 575 Gene3D Jelly Rolls 414 463 IPR014710 -
Cpe17g00164 575 PANTHER PROTEIN TIFY 4B-LIKE ISOFORM X1 4 305 - -
Cpe17g00164 575 SMART tify_2 138 173 IPR010399 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00176 Cpe17g00164 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00164 Cpe-Chr17:1038124 Cpe12g00571 Cpe-Chr12:5803426 5.45E-09 dispersed
Cpe12g00176 Cpe-Chr12:1140816 Cpe17g00164 Cpe-Chr17:1038124 0 transposed
Cpe12g00175 Cpe-Chr12:1138386 Cpe17g00164 Cpe-Chr17:1038124 1.47E-07 wgd
Cpe17g00164 Cpe-Chr17:1038124 Cpe03g01463 Cpe-Chr3:11642018 2.86E-09 wgd
Cpe17g00164 Cpe-Chr17:1038124 Cpe08g00283 Cpe-Chr8:1821665 3.65E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50774 PF06200 tify 9.30E-15 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00164 - - csv:101204377 611.298