Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00168 ATGGCACAATCTCTGCAGCTTTTCACCTCCTCCACCACCCGCTCGCCGCCCATTTCTCTTCCGAAACATTCCCTCTCAAAACCCCCCTCCTCTTCCACCGCCGCCTTCCGCCTCCCTGTCTCCTTCAACAAATTTTCAATTCGAGCCGCTTCCGCTCCGGATCTCAACCCTCTGTCATCAGCTTCCACTTCCCAAGTCTTGGTTTCTGAAAATGGCTCGAGTTCCGGAGGTGGGTTTGTGTCTACTTCTGCAGCTACCAGGGAGTTTGTGCCGGCTGTGTCTGATGGCAGCTCGATTGACGTCGATACTGTCACGGAGGCTGAGTTGAAGGAGAATGGCTTCAGGAGTACAAGGAGGACGAAGCTTGTGTGTACTATTGGTCCTGTTACTTGCGGATTTGAGCAGCTTGAAGCGCTTGCTGTTGGCGGTATGAATGTTGCGAGGATCAATATGTGCCATGGGACTCGAGAGTGGCATCGGATGGTCATTGAACGCGTGCGGAGGCTCAATGAGGAGAAGGGCTATGCTGTGGCTATTATGATGGATACTGAAGGGAGTGAAATTCATATGGGTGATCTTGGTGGAGCTTCTTCGGCTAAAGCGGAAGATGGTGAAATCTGGACATTCAGTGTCAGAGCTTTTGATTCAACACTCCCAGAACGCACCATTAATGTGAACTACGAAGGGTTTGCAGAAGATGTGAGAGTTGGTGATGATCTCCTTGTTGATGGTGGAATGGTGAGGTTTGAGGTAATCGAAAAGATTGGTCCTGATGTTAAGTGCCTGTGTACTGACCCGGGATTGTTGTTGCCACGGGCTAATTTGACTTTTTGGAGGGATGGACATCTCGATTGGTTGGATATTGATTTTGGGATTGCTGAAGGTGTTGATTTTCTTGCCATATCATTTGTCAAGTCTGCTGAAGTGATTAAACATCTCAAAAGCTATATTGCTGCACGTTCTCGTGGCAGTGACATTTCCATCATTGCGAAGATAGAGAGTCTGGACTCATTGAAGAACTTGGAAGAAATTATTGTAGCATCTGATGGAGCTATGGTAGCCAGAGGAGATTTAGGAGCTCAAATACCACTGGAACAGGTGCCATCAGTCCAGCAAAAGGTCGTCCAACTATGCAGGCGGTTAAATAAGCCAGTTATTGTTGCCTCTCAGCTGCTCGAGTCGATGATCGAATACCCTACACCTACCAGAGCTGAAGTTGCTGATGTTTCCGAGGCTGTTAGGCAGCGAGCAGATGCTCTAATGCTCTCAGGTGAGTCCGCCATGGGCCAGTTCCCCGAGAAGGCATTGACCGTCTTGAGAAGCGTCAGTCTAAGAATTGAGAAGTGGTGGAGGGATGAGAAACGCCATGAAGCTATGGAACTCCCAGAAGTTGGATCTTCATACTCGGATAGCATCTTAGAAGAGATCTGCAATTCCACTGCCAAAATGGCCAATAATTTGGAGGTGGATGCAATTTTTGTCTACACAAAGACAGGCCACATGGCATCTCTCCTATCCCGTTGCAGACCCGATTGCCCGATCTTTGCGTTTACTTCCACGACATCTGTGAGGAGACGTCTTAACTTGCAATGGGGCTTGATACCCTTCCGCTTGAGCTTCTCGGACGACATGGAAAACAACCTCAACAAAACGTTTATGCTGCTTAAAGCCAGAAACTTGATAAAATCAGGTGACCTTGTACTTGCTGTATCAGACATGCTGCAGTCTATTCAAGTAATGAATGTTCCATAA 1752 47.89 MAQSLQLFTSSTTRSPPISLPKHSLSKPPSSSTAAFRLPVSFNKFSIRAASAPDLNPLSSASTSQVLVSENGSSSGGGFVSTSAATREFVPAVSDGSSIDVDTVTEAELKENGFRSTRRTKLVCTIGPVTCGFEQLEALAVGGMNVARINMCHGTREWHRMVIERVRRLNEEKGYAVAIMMDTEGSEIHMGDLGGASSAKAEDGEIWTFSVRAFDSTLPERTINVNYEGFAEDVRVGDDLLVDGGMVRFEVIEKIGPDVKCLCTDPGLLLPRANLTFWRDGHLDWLDIDFGIAEGVDFLAISFVKSAEVIKHLKSYIAARSRGSDISIIAKIESLDSLKNLEEIIVASDGAMVARGDLGAQIPLEQVPSVQQKVVQLCRRLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPEKALTVLRSVSLRIEKWWRDEKRHEAMELPEVGSSYSDSILEEICNSTAKMANNLEVDAIFVYTKTGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLQWGLIPFRLSFSDDMENNLNKTFMLLKARNLIKSGDLVLAVSDMLQSIQVMNVP 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1066473 1070477 + Cp4.1LG17g01650.1 Cpe17g00168 483486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00168 583 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 102 450 IPR015813 GO:0003824
Cpe17g00168 583 PANTHER PYRUVATE KINASE 85 583 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe17g00168 583 PANTHER PLASTIDIAL PYRUVATE KINASE 1, CHLOROPLASTIC 85 583 - -
Cpe17g00168 583 SUPERFAMILY PK beta-barrel domain-like 187 278 IPR011037 -
Cpe17g00168 583 ProSitePatterns Pyruvate kinase active site signature. 326 338 IPR018209 GO:0004743|GO:0006096
Cpe17g00168 583 Gene3D - 186 278 IPR015806 GO:0004743|GO:0006096
Cpe17g00168 583 Gene3D - 118 446 IPR040442 -
Cpe17g00168 583 Pfam Pyruvate kinase, alpha/beta domain 474 573 IPR015795 -
Cpe17g00168 583 Gene3D - 447 573 IPR036918 -
Cpe17g00168 583 MobiDBLite consensus disorder prediction 1 32 - -
Cpe17g00168 583 SUPERFAMILY PK C-terminal domain-like 435 581 IPR036918 -
Cpe17g00168 583 TIGRFAM pyruv_kin: pyruvate kinase 118 572 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe17g00168 583 PRINTS Pyruvate kinase family signature 296 310 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe17g00168 583 PRINTS Pyruvate kinase family signature 355 379 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe17g00168 583 PRINTS Pyruvate kinase family signature 424 440 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe17g00168 583 PRINTS Pyruvate kinase family signature 175 191 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe17g00168 583 PRINTS Pyruvate kinase family signature 405 423 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe17g00168 583 PRINTS Pyruvate kinase family signature 380 404 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe17g00168 583 PRINTS Pyruvate kinase family signature 328 354 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cpe17g00168 583 Pfam Pyruvate kinase, barrel domain 118 449 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00168 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101218017 1009.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00169 Cpe17g00168 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00251 Cpe-Chr14:1454729 Cpe17g00168 Cpe-Chr17:1066473 0 dispersed
Cpe15g00346 Cpe-Chr15:4647442 Cpe17g00168 Cpe-Chr17:1066473 1.49E-118 dispersed
Cpe17g00168 Cpe-Chr17:1066473 Cpe05g00567 Cpe-Chr5:3427347 1.04E-65 dispersed
Cpe12g00169 Cpe-Chr12:1105162 Cpe17g00168 Cpe-Chr17:1066473 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g584 Blo01g00106 . . Bda08g00261 . . . Bma05g01085 . . . . . . . . . . . . . . . . Cla06g00619 Cam06g0657 Cec06g0661 Cco06g0667 Clacu06g0644 Cmu06g0638 Cre06g1405 . . . . . Csa02g01116 Chy05g00372 . . . . . Bpe05g00875 . . . Sed09g0729 . . Cma08g01117 Cma17g00198 Car08g01000 Car17g00175 Cpe12g00169 Cpe17g00168 Bhi12g02248 Tan06g2474 Cmetu05g0533 . Hepe03g0236 . Lcy13g0319 . . . . . . . Lsi09g01285 . . Cme05g00500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006080 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00168 Cpe_Chr17 FPKM 0.0 0.0 0.476471 0.671039 0.0 0.0 0.0 0.152334 0.112734 0.164752