Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00170 ATGGAGTCCGGTGGTCCGCCCACCCCTCCGCCGCTCCCGCCGCTGCCCACCGGCGCCATCCTTCTCGGCAAATATCAGTTAGGTCGTTTTCTCGGCCGTGGAAGCTTCGCTAAGGTGTACCAGGCTCGTTCTCTCGCCGATGACTCCATCGTCGCCATTAAAATCATCGACAAGAACAAAACCATCGATGCCGCCATGGAGCCTTGCATTATCCGTGAGATCGCCGCGATGCGCCGCCTTCAGCACCATCCAAACATCCTCAAAATCCACGAAGTCATGGCGACAAAGACGAAGATCTATCTCGTCGTCGATTACGCCTCCGGTGGTGAACTCTTCGCGAAACTCCTCCGCCGTGGTAGGTTAACGGAATCCTCCGCCCGCCGCTACTTTCAACAACTCGTCTCTGCTCTGCATTTCTGTCACCAAAACGCCGTCGCTCATCGCGACATCAAACCCCAAAATCTCCTCCTCGACGAAGACGGTAACCTAAAGGTCTCCGACTTCGGTCTGTCAGCGTTACCAGAACAAATCAAAGACGGAATGCTCCACACAGCGTGCGGAACCCCTGCTTACGCAGCGCCAGAGGTAGTCACCAGGAGAGGCTACGACGGCGCAAAAGCCGACGCGTGGTCATGCGGCGTTATCCTCTTCGTCTTACTCTCCGGACACCTCCCATTCACCGACAACAATCTCGTGGCCATGTACAGTAAAGTTTACCGCCGGGAGTATCAATTTCCCGATTCGATTTCTAAGCCGGCTCGGCATTTGATTTTCCAACTTCTGGATCCAAATCCGAACACGAGGATGAGCATCGAGGCGTTGATGCAGCATTCGTGGTACAAGAAATCGGTGCGATCGAAGCCCCAAATCAGCAACAGAAGCTTGTTCGAATCGTTGGGTAATTACAAATCTGAATTGGGGGTTTCTGGATTAAATGCTTTTGATATAATTTCAATGTCATCTGGTTTGGATCTGTCGGGGCTGTTTGAGACAACGGATGATTGTAAGAAGAAGAGATTCACGACGGCGGTGAGCGTGGAGAAGGTGGAGGAGAGAGTAACAGAGATCGGTGGGGAATTGGGGTACAGAGTGGAGAAAGGGAAGAGCGGAGCAATTGGGTTAGGGAAAGGGAGGATGATTTTGGTGGTGGAGGTTTTGGAAATCACTGCTAATCTCTTAATTGTTGAAGTCAAGGTAGCTGAATCCAAAGCTGAGTTCGAGAGGATGCATTGGGGGGATTTGAAAGCCAAGTTGCAGGACATTGTTGTTTCTTGGCATACCAATGAGGAGGCCATATGA 1299 51.73 MESGGPPTPPPLPPLPTGAILLGKYQLGRFLGRGSFAKVYQARSLADDSIVAIKIIDKNKTIDAAMEPCIIREIAAMRRLQHHPNILKIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESSARRYFQQLVSALHFCHQNAVAHRDIKPQNLLLDEDGNLKVSDFGLSALPEQIKDGMLHTACGTPAYAAPEVVTRRGYDGAKADAWSCGVILFVLLSGHLPFTDNNLVAMYSKVYRREYQFPDSISKPARHLIFQLLDPNPNTRMSIEALMQHSWYKKSVRSKPQISNRSLFESLGNYKSELGVSGLNAFDIISMSSGLDLSGLFETTDDCKKKRFTTAVSVEKVEERVTEIGGELGYRVEKGKSGAIGLGKGRMILVVEVLEITANLLIVEVKVAESKAEFERMHWGDLKAKLQDIVVSWHTNEEAI 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1082441 1083739 + Cp4.1LG17g01610.1 Cpe17g00170 483488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00170 432 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cpe17g00170 432 Pfam NAF domain 311 366 IPR004041 GO:0007165
Cpe17g00170 432 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00170 432 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 428 - -
Cpe17g00170 432 SMART serkin_6 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00170 432 Gene3D Transferase(Phosphotransferase) domain 1 18 309 - -
Cpe17g00170 432 PANTHER SERINE/THREONINE KINASE 16 428 - -
Cpe17g00170 432 CDD CIPK_C 312 415 - -
Cpe17g00170 432 Gene3D Kinase associated domain 1, KA1 310 424 - -
Cpe17g00170 432 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Cpe17g00170 432 Pfam Protein kinase domain 25 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00170 432 SUPERFAMILY Protein kinase-like (PK-like) 21 288 IPR011009 -
Cpe17g00170 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01482 Cpe17g00170 CCT
Cpe12g00166 Cpe17g00170 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00170 Cpe-Chr17:1082441 Cpe10g00992 Cpe-Chr10:5638980 2.50E-133 dispersed
Cpe12g00166 Cpe-Chr12:1086048 Cpe17g00170 Cpe-Chr17:1082441 0 wgd
Cpe17g00170 Cpe-Chr17:1082441 Cpe03g01482 Cpe-Chr3:11725168 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62930 PF00069 Pkinase 1.30E-71 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00170 K12761 - csv:101215156 785.023