Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00172 ATGGCTCGGGACGGGCATGTGGTGCCGGTGGATCCACAGACGGCGTTGACTGTTAAGAAGAAGAAACAGTCTTCTCGGAGTTGGATTCTACTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGTATGCGATTATGCATCGAGTTCAAATTCATGCTCGAGATCTTCGGATTCTTGACCCTTTGCTTTCTTATCCCTCTAAGATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTGGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTGCTTAGAGATCCAACAGATGAACATGTCATCCCTGTGGTTGAAGAGCTTCAGAGACGACTGCCTCCTTCCAATGTCTTCCAAGAGTATCAGGGTGGGCTACACGATGGTGAAGCTGAAGAAGATGAATCCCCATTTGAATTCCGTGCCCTCGAGGTAGCTTTGGAAGCTATATGTAGTTTTCTTGCCGCTCGGACAACTGAACTGGAGACTGCTGCTTATCCAGCATTGGATGAGCTTACTACCAAGGTGAGAGATGAGCTTGAACAATTACTAGACGATGACGAAGATATGGCAGACCTTTACTTGTCAAGAAAGACGAGTTCATCTTCTCCTGTAAGTGGTTCTGGTCCTGCCAATTGGTTTCCTGCATCTCCTACCATTGGTTCAAAGATCTCAAGAGCAAGCAGAGCAAGTATTGCAACTGCACGAGGGGACGAAGATGACATCGAAGAGCTTGAAATGTTACTGGAGGCCTACTTTATGCAGATTGATGGTACATTGAACAAATTAACTACAGTGAGAGATGAGCTTGAACAATTACTAGACGATGACGAAGATATGGCAGACCTTTACTTGTCAAGAAAGACGAGTTCATCTTCTCCTGTAAGTGGTTCTGGTCCTGCCAATTGGTTTCCTGCATCTCCTACCATTGGTTCAAAGATCTCAAGAGCAAGCAGAGCAAGTATTGCAACTGCACGAGGGGACGAAGATGACATCGAAGAGCTTGAAATGTTACTGGAGGCCTACTTTATGCAGATTGATGGTACATTGAACAAATTAACTACACTGCGAGAATATATTGACGACACAGAAGATTATATCAATATCCAGCTCGATAATCATCGAAATCAACTCATCCAGTTGGAGCTGTTTTTAAGTTCTGGAACGGTTTGTATGTCTATCTATTCATTGGTGAGTGCCATATTTGGAATGAATATTCCATATACTTGGAATGACGACCATGGATACATGTTTAAATGGGTTGTCATTGTTTCTGGAGTAGCTTGCGCTTTGCTGTTCGTGGTGATTGTTTACTATGCTCGCCTCAAAGGTTTGGTGGGGTCTTGA 1353 44.35 MARDGHVVPVDPQTALTVKKKKQSSRSWILLDCTGQGTVLDVDKYAIMHRVQIHARDLRILDPLLSYPSKILGRERAIVLNLEHIKAIITAEEVLLRDPTDEHVIPVVEELQRRLPPSNVFQEYQGGLHDGEAEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTTKVRDELEQLLDDDEDMADLYLSRKTSSSSPVSGSGPANWFPASPTIGSKISRASRASIATARGDEDDIEELEMLLEAYFMQIDGTLNKLTTVRDELEQLLDDDEDMADLYLSRKTSSSSPVSGSGPANWFPASPTIGSKISRASRASIATARGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCMSIYSLVSAIFGMNIPYTWNDDHGYMFKWVVIVSGVACALLFVVIVYYARLKGLVGS 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1096894 1103256 + Cp4.1LG17g01740.1 Cpe17g00172 483490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00172 450 Gene3D Magnesium transport protein CorA, transmembrane region 268 380 - -
Cpe17g00172 450 PANTHER MAGNESIUM TRANSPORTER MRS2-I 1 178 - -
Cpe17g00172 450 Gene3D Magnesium transport protein CorA, transmembrane region 106 176 - -
Cpe17g00172 450 PANTHER MAGNESIUM TRANSPORTER MRS2-I 268 450 - -
Cpe17g00172 450 Gene3D Magnesium transport protein CorA, transmembrane region 177 267 - -
Cpe17g00172 450 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 268 450 IPR039204 -
Cpe17g00172 450 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 386 439 IPR045863 -
Cpe17g00172 450 Coils Coil 258 282 - -
Cpe17g00172 450 Gene3D - 14 99 - -
Cpe17g00172 450 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 176 270 IPR039204 -
Cpe17g00172 450 CDD Mrs2_Mfm1p-like 28 447 IPR039204 -
Cpe17g00172 450 Pfam CorA-like Mg2+ transporter protein 324 438 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cpe17g00172 450 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 178 IPR039204 -
Cpe17g00172 450 PANTHER MAGNESIUM TRANSPORTER MRS2-I 176 270 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00161 Cpe17g00172 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00161 Cpe-Chr12:1043975 Cpe17g00172 Cpe-Chr17:1096894 5.84E-111 wgd
Cpe15g00049 Cpe-Chr15:327493 Cpe17g00172 Cpe-Chr17:1096894 2.40E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00172 K16075 - csv:101203841 427.943