Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00187 ATGGCTTTCAATGATTTTGGTACTGATGGAGGATCAGCGGCCAAGTATCTGAAGCCGAAATTCAACGTTTTCACTCGCAATTTCGAATCTCATACAGGGTTGAATTTCCCAAAAGTTGAGATCTTACATCTTGTGGCTAGTGCGATTGCGTTGAAGGGCCTTGGAAGTCTGCTGTTCATCTTCAATAGCTCCATTGGAGCCTTTCTACTGATCTTGCATCAGGCTATTGCTACACCGATCTTGTACGATTTCTACAACTACGATGTGGAGAAGAAGGAATTCAACCAACTGTTTGTGAAATTCACTCAGACGGCGGCGGAAGGTCGGAGTTCGGCGGAGAAGCATTCCGTCAACCACGCCTACGACCGGCAAAGAGAATTGAAAGCTTTAGACGAATCAAAATTAGGCGTAAAAGGACTGGTGGACTCGGGCTTGACGAACCTCCCAAAAATCTTCCTCCACCAAAACCAGAAGTCCTCCTCCACGGCCGCCCTACCATCCGACGACTCCCGTTTCACCATCCCCATCATCGATCTTCACTCAACGGCCCAAAACCCCCAATCGCGATCCATCATAATCGACCAAATCCGAGACGCTTCCGAAAATTGGGGGTTCTTCCAAATCCTTAACCACGGCATCCCCTCAACCGTCACGGCGGAGATGCAGGCCGGAATCCGACGGTTCCACGAGCAAGACGACGAACAAAAGAAGCAATTCTACTCTCGCGACTACACCAAAACGGTACTCTACAACACCAATTTCGATCTCTACCAAGCCCCTGTTACAAATTGGAGAGACACACTAACCTGCGCAATCGCACCACGAGGGGCTGAACCCAAAGACATACCCTTAATCTGTAGGGACATAATCCTTAATTACACCAAAAGGGTACTCGAATTAGGGAAGACCCTATTCGAATTGGTGTCCGAAGCTCTAGGGCTCGGCTCCAATCGGTTGAACGAAATCGGCTGCAGCGAGGGACTTGTCCTGTTCGGCCATTACTACCCAGCCTGCCCTGAACCAGAGCTCGCAATTGGAACCAGCGACCACTCCGACAGCAGTTTCTTAACAGTGCTTTTACAGGACCAAATCGGGGGGCTTCAAGTCCGCCATGATGACCGGTGGGTTGATGTCCGGCCAATCGACGGCGCGCTTGTGATAAACATCGGCGATATGTTACAGCTTGTTTCGAATGGTCGATTGAAGAGCTTGAATCATAGGGTGATGGCTAAAAGTGAAGGGCCGAGGATATCGGTGGCGTGTTTTTTCAGGTACCAGTTTCCGCCGGAGAGTGAGAGGAAGGTTTATGGGCCGATAAAGGAGTTGATTTCGGAGGAGAAGCCGGCGGTTTATAGAGAAACAACGATCAAGAACTTTGTGGCGCATTATTATACTAAAGGGCTTAATGGGGTCTCTGCGCTTGAACATTCGATCGTAATGGCGGCCATTAAAACCGAGTCACTCAACTCGAGAAGATCCCAGTTGGAAGCGTTCGAGAATACAAAATCCGGCGTGAAGGGGCTGTTGGACGCCGGAATAACCAAAATCCCGTCTATATTTCACTGCCACGTCAAACCACATACCAACACCGCCGCCACAGAGTCAGAGTCGAGTATTCCGATAATCGACCTCCACGGCAGCGTCGAAGAGGTGGTGGATGAAATCAGAAACGCTTGCCGGAAATGGGGGTTTTTCCAGGTGGTGAATCATGGGATTCCGGTGGAAGTTCTGGAGCAAATAATCAATGGGGTTCGTGGGTTTCATGAACAAGATCCAGAGTTGAAGAAACAATTTTACGGCCGGGATCGTACCAAAAAAGTGAGCTATTTTTCGAATTTCGATCTGTTCCAATCGAAAGCGGCTAATTGGAGAGACACCCTTTCTTTTTCCATGGCTCCCAGCCTTCCCCTTCCCGAGGAGATCCCTCAAATTTGCAGAGAAATAGTGATGGAATACACAGAGCAAGTGAAGAAATTGGGATTAACTCTGTTTCAGCTGATATCAAAGGCTCTTGAACTTGGAGATACCCGTTTGAAGGACATGGGCTGCGCAGAGGGGCTCCTAATGTTAGGCCATTACTACCCAGCCTGCCCCGAGCCTGACCTGACCCTTGGCACCACCAACCACACCGATGTGGCCTTCATTACCATACTTTTACAGGACCAAATCGGTGGCCTCCAAGTCTTCCATGACAATCAATGGTTCGATGTCCCCCCAATGCATGGAGCCCTTGTAATCAATCAGATCATTTCGAACGATAAAATGGTGAGTGTGAGTCACCGGGTGGTAGCAAAGGAGATAGGGCCAAGAACTTCAATAGCAAGCCAGTTTCGACCATACATGGGGAAGGATGTGAATAACTTGAAATTGTATGAACCGATTAAAGAGCTATTATCTGAAGACAACCCTCCAATCTACAGACAGGTCAATCCTAAAGAATTTATAGAGCTACACTTTTCAAATGGGCTTGACGAGTGTTCTAAATTAGACTTGTTTAAGTTGTAA 2505 48.26 MAFNDFGTDGGSAAKYLKPKFNVFTRNFESHTGLNFPKVEILHLVASAIALKGLGSLLFIFNSSIGAFLLILHQAIATPILYDFYNYDVEKKEFNQLFVKFTQTAAEGRSSAEKHSVNHAYDRQRELKALDESKLGVKGLVDSGLTNLPKIFLHQNQKSSSTAALPSDDSRFTIPIIDLHSTAQNPQSRSIIIDQIRDASENWGFFQILNHGIPSTVTAEMQAGIRRFHEQDDEQKKQFYSRDYTKTVLYNTNFDLYQAPVTNWRDTLTCAIAPRGAEPKDIPLICRDIILNYTKRVLELGKTLFELVSEALGLGSNRLNEIGCSEGLVLFGHYYPACPEPELAIGTSDHSDSSFLTVLLQDQIGGLQVRHDDRWVDVRPIDGALVINIGDMLQLVSNGRLKSLNHRVMAKSEGPRISVACFFRYQFPPESERKVYGPIKELISEEKPAVYRETTIKNFVAHYYTKGLNGVSALEHSIVMAAIKTESLNSRRSQLEAFENTKSGVKGLLDAGITKIPSIFHCHVKPHTNTAATESESSIPIIDLHGSVEEVVDEIRNACRKWGFFQVVNHGIPVEVLEQIINGVRGFHEQDPELKKQFYGRDRTKKVSYFSNFDLFQSKAANWRDTLSFSMAPSLPLPEEIPQICREIVMEYTEQVKKLGLTLFQLISKALELGDTRLKDMGCAEGLLMLGHYYPACPEPDLTLGTTNHTDVAFITILLQDQIGGLQVFHDNQWFDVPPMHGALVINQIISNDKMVSVSHRVVAKEIGPRTSIASQFRPYMGKDVNNLKLYEPIKELLSEDNPPIYRQVNPKEFIELHFSNGLDECSKLDLFKL 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1200966 1206636 + Cp4.1LG17g01790.1 Cpe17g00187 483505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00187 834 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE HOMOLOG 1-LIKE 486 832 - -
Cpe17g00187 834 Pfam 2OG-Fe(II) oxygenase superfamily 690 778 IPR044861 -
Cpe17g00187 834 Pfam 2OG-Fe(II) oxygenase superfamily 332 424 IPR044861 -
Cpe17g00187 834 SUPERFAMILY Clavaminate synthase-like 502 823 - -
Cpe17g00187 834 Pfam HR-like lesion-inducing 2 106 IPR008637 -
Cpe17g00187 834 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 326 427 IPR005123 -
Cpe17g00187 834 Gene3D - 127 462 IPR027443 -
Cpe17g00187 834 Gene3D - 495 817 IPR027443 -
Cpe17g00187 834 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE HOMOLOG 1-LIKE 116 467 - -
Cpe17g00187 834 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 683 779 IPR005123 -
Cpe17g00187 834 Pfam non-haem dioxygenase in morphine synthesis N-terminal 539 632 IPR026992 -
Cpe17g00187 834 Pfam non-haem dioxygenase in morphine synthesis N-terminal 174 275 IPR026992 -
Cpe17g00187 834 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 486 832 - -
Cpe17g00187 834 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 116 467 - -
Cpe17g00187 834 SUPERFAMILY Clavaminate synthase-like 134 469 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00187 - - - pavi:110748981 764.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00058 Cpe-Chr1:355698 Cpe17g00187 Cpe-Chr17:1200966 3.69E-86 dispersed
Cpe03g01509 Cpe-Chr3:11844846 Cpe17g00187 Cpe-Chr17:1200966 0 dispersed
Cpe08g00325 Cpe-Chr8:2041892 Cpe17g00187 Cpe-Chr17:1200966 1.18E-86 dispersed
Cpe12g00148 Cpe-Chr12:950233 Cpe17g00187 Cpe-Chr17:1200966 1.24E-60 dispersed
Cpe17g00187 Cpe-Chr17:1200966 Cpe17g00889 Cpe-Chr17:6908817 2.67E-92 dispersed
Cpe17g00186 Cpe-Chr17:1194570 Cpe17g00187 Cpe-Chr17:1200966 1.39E-21 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g652 . . . . . . . . . . . Cma14g01801 . Car14g01618 . . . . . . . . . . . . . . . . . . . Cone7ag0313 . Lsi05g01707 . . . . . Bda11g00624 . . . . Bma06g01595 . . Cmo14g01839 . . . . . Cpe17g00187 Bhi12g01637 . . Lac12g2192 Hepe03g0269 . Lcy13g0358 . . . . . . . . Csa03g01230 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000120 1 1 3 2 2 1 5 9 8 1 3 7 6 4 12 8 7 4 4 8 9 14 11 13 12 12 11 13 13 18 222
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00187 Cpe_Chr17 FPKM 15.674373 17.088268 7.587628 7.673823 10.416573 11.307995 11.197406 7.500924 6.868315 7.180742