Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00198 ATGGAAGCTACTAGATGTTGGTTTAAGAAGTTCAAATCCAAAGACAATCCAAAGCCCCCTACAAATAAGGAGAGTACAGGCAATGCAAGAGATGCATCGAGACCACCAACCAGTGAAGAGGTACCCTCCAATGTCACCAAGCAGAAGGTTGCAGCTGCCAAACAGTATATAGAAAACCACTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGACGCCATGTACTAGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAAGAAGAGCAAAGCAACCTGCTTAAGCATCTAGAGAAGAAGGAAACAGAGTATATGCGTCTTCAGAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCAACTGGCCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAGCATGTGAAAGCTGAAAGGAATCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGTTGTACTGCTCTTTCCAAGATGAAGAGTATTTATATCTTATTATGGAATACTTACCTGGTGGGGATATGATGACTTTGTTGATGAGGAAAGATACTCTTACAGAAGATGAGGCTCGATTTTATGTTGGTGAAACAGTTTTAGCTATCGAGTCAATCCATAAACATAATTATATCCACAGAGATATCAAGCCTGATAACTTGCTTCTTGACAAGGATGGCCATATGAAATTATCAGATTTTGGATTATGTAAACCATTAGATTGTAGTAACCTCCAAGAAAAGGATTTTTCCCAGGGAAGTAACCTTAGTGGTGCTCTTCAAGGTGATGGGCGTCCTGTGGCATCAAAACGCACACAGCAGGAACAACTACAGCATTGGCAAAGGAACAGGCGGATGCTTGCTTATTCTACAGTTGGAACGCCTGATTATATTGCTCCGGAAGTTCTGCTGAAGAAAGGATATGGAATGGAATGCGATTGGTGGTCACTTGGTGCCATCATGTATGAAATGCTTGTGGGTTTTCCACCGTTTTACTCAGATGAGCCTATGTCAACTTGTAGGAAGATAGTTAATTGGAAAACTCATTTGAAATTTCCAGAAGAAGCGAAACTCTCTCCAGAAGCGAAGGATCTAATTAGTAAACTCTTATGCAATGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCACACCCATGGTTCAAGGGCATTGAATGGGACAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAATGATGAACTGGATACTCAAAATTTTGAGAAGTTTGAAGAGACTGAAAACTCAATTCAGACGTCATCGAAATCAGGTCCATGGAGAAAGATGCTGTCATCGAAAGATATTAACTTTGTGGGTTATACGTACAAGAACTTCGAAATCATCGATGATAATCAATTGCCTGGAATCGCTGAATTGAAGAAGAAGAGCACAAAATCTAAAAGACCTTCCATCAAATCTCTTTTCGAAAACGAATCTGCAATGGCGACCAATCAACAACCTGTTCAAGGCAGCTTTTTGAAACTCTTGCCTCCCCAACTAGAAGTTCCTGAGAAACCGATGAGCGCCAATGGGAAGCATTCATGA 1662 41.34 MEATRCWFKKFKSKDNPKPPTNKESTGNARDASRPPTSEEVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGSNLSGALQGDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWKTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENSIQTSSKSGPWRKMLSSKDINFVGYTYKNFEIIDDNQLPGIAELKKKSTKSKRPSIKSLFENESAMATNQQPVQGSFLKLLPPQLEVPEKPMSANGKHS 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1277546 1284447 + Cp4.1LG17g01940.1 Cpe17g00198 483516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00198 553 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cpe17g00198 553 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 520 - -
Cpe17g00198 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Cpe17g00198 553 Gene3D Transferase(Phosphotransferase) domain 1 205 435 - -
Cpe17g00198 553 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Cpe17g00198 553 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 41 520 - -
Cpe17g00198 553 MobiDBLite consensus disorder prediction 1 48 - -
Cpe17g00198 553 SMART serkin_6 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00198 553 SUPERFAMILY Protein kinase-like (PK-like) 94 471 IPR011009 -
Cpe17g00198 553 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00198 553 Coils Coil 68 102 - -
Cpe17g00198 553 CDD STKc_NDR_like 117 482 - -
Cpe17g00198 553 Gene3D Phosphorylase Kinase; domain 1 108 204 - -
Cpe17g00198 553 MobiDBLite consensus disorder prediction 20 48 - -
Cpe17g00198 553 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cpe17g00198 553 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00198 553 MobiDBLite consensus disorder prediction 1 19 - -
Cpe17g00198 553 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00136 Cpe17g00198 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01042 Cpe-Chr4:9213627 Cpe17g00198 Cpe-Chr17:1277546 0 dispersed
Cpe05g00706 Cpe-Chr5:4326768 Cpe17g00198 Cpe-Chr17:1277546 1.39E-73 dispersed
Cpe10g00039 Cpe-Chr10:261697 Cpe17g00198 Cpe-Chr17:1277546 0 dispersed
Cpe11g00151 Cpe-Chr11:846568 Cpe17g00198 Cpe-Chr17:1277546 0 dispersed
Cpe12g01138 Cpe-Chr12:9355714 Cpe17g00198 Cpe-Chr17:1277546 6.54E-162 dispersed
Cpe13g00064 Cpe-Chr13:499080 Cpe17g00198 Cpe-Chr17:1277546 2.29E-85 dispersed
Cpe17g00198 Cpe-Chr17:1277546 Cpe17g00907 Cpe-Chr17:7020142 0 dispersed
Cpe12g00136 Cpe-Chr12:864627 Cpe17g00198 Cpe-Chr17:1277546 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62931 PF00069 Pkinase 7.10E-66 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00198 K08790 - csv:101205120 1076.23