Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00203 ATGGCTCCAACGCCGTCTTCTAAATCAAATCAAAGTCACATGAGCCAATTGAGAACTCCTCAAGCGAAGCGGCTCAATTTCCATACCCCTAGGGCACATCCATCCCCTTTCCCCAATTCCGCCATTAAAGACTCCCAATCCGAGCACCCAGCAGAAGTAATCGGCCGGATCCGAGAATATCCTGACCGGAAAGAAAAACCGGTTTCGATTCTGCAGATCAATCCTGACGGTCAGAACGTTCGGGTTCGGGCCGATTTCGGGTACCGCGATTTCAGCCTCGATGGTATTTCTCTGTCGGAAGAGGAAGATCTCGATACGTTTTACAAGAAGTTCGTCCAAGCGAGGATTCACGGCGTTAAGTTGGGGGAGAAATGTACGATTATGATGTACGGACCCACTGGCGCCGGCAAGAGCCACACCATGTTTGGCTGTGCGAAACAGCCCGGGATTGTGTATCGGTCGCTGAAGGACATTTTAGGCGACGGAGAAAGTGAAACCGCCGGCGGAGAGCGGTTGGGAGTTGGAATGTTTGTACAAGTTACGGTGCTGGAGATTTATAATGAAGAAATATATGATCTTCTAACGAGTAATTCTGGTGGAGGGCTAGGGCTTGGCTGGCCTAAGGGCAGTGCCACTAAGGTGAAGCTTGAAGTGATGGGGAAGAAGGCAAAGAATGCTACTTATCTATCTGGTAATGAAGCAGGAAAGATTTCCAAAGAGATTCAGAAAGTGGAGAAAAGAAGGATTGTTAAAAGTACACTCTGTAATGAGAGAAGTTCAAGAAGCCATTGCATGATAATCCTCGACGTGCCGACTGTCGGTGGGCGCCTAATGCTTGTCGATATGGCTGGTTCTGAAAATATAGAGCAAGCTGGGCAAGTTGGATTCGAGGCAAAAATGCAGACAGCAAAGATTAATCAAGGTAACATTGCACTGAAAAGAGTGGTTGAATCAATTGCTAATGGTGATTCTCATGTGCCTTTTAGAGACAGTAAATTGACAATGCTTTTGCAGGATTCTTTTGAGGATGATAAATCCAAAATTCTGATGATTCTATGTGCCAGTCCTGATCCCAAAGAATTACACAAGACGATCTCGACACTCGAATATGGTGCGAAAGCCAAATGCATCGTCCGTGGTCCGCATACGCCGACGAAGGATAAATGTGGTGCTGATGAGTCTGCTTCTGCTGTTATTCTGGGATCTAGAATTGCAGCCATGGATGATTTCATCTTCAAGTTACAAAAGGAGAACAAACTCAGAGAGAAAGAGAGAAATGAGGCACATAGAGAACTCTTGAAGAAAGAAGAACAAGTGGCAGAATTGAGAGCTAGGCTCGAGCAAGCAGGCTCGAGAGGATCGGGGGCGAGCGAGGAAGAGATCAATTCGAAGGTGAACGAAAGAACCGAAATTCTGAAACTTGAGTTGGAGAGGAAGCTGGAGGAGTGCCAGAGAATGGCTCATGAATTTGTTGAATTGGAAAGGAGAAGAATGGAAGAGAGGATACTGCAGCAGCAACACGAAGTCGAAACGTTGAGACGACGTTTGGAAGAAATCGAAACCGGACTATTGAATTCAAGGAATAATGCAGCAACAAGCAATGATGTTGTAAACAAATCAAGGGACATGGATGGCTGCAGGCTTGCTAAAAGGCTCTTAGGAGGAGTTTATGCAAGTGCAGATGCAGGGATGGTGAAGTCCATGGACTTGGACATGGATGATCAAGAACCGATCATCGCCGGTATGGATTATCAACCGTCTACCAACAATGGTATCCAAAGCCTACTAGAGAAAGTGAACGAGTCGGTCGATCACGACGTGGTTTCATCACGGTTTAGGGACAGTGATAGAGTATGCCTAAGTACTGTGTTAGAGGAAGACGATGCAGAAGATGAAGAGGATAAGGAAGTAATAGAAGAAAAGAGAGTAGTGAGTACAGTTATGAACAGAAGTCAGAATCTCAAGGAGAGATCGGAGATCGGCATCGGATTAATAAACGATGACGAAAACTCAAAGGACACCGCATTCTCGAGAAAATTGAGAATTCAAAATATATTTACTCTTTGTGGAAACCAGAGAGAACTTTCACATCAAATTCTATCAGACATGACGAACCAGAAGGGAGGAGCTGTATTAGCAGAGAATGAAGAGGCAAAGCTGCAGCCTATAAAGCTAGCAGTAAAGGGGGGAGTGAACAGCCCAGGAGGTGTTGATGATGTTGTTGTGCCATTGAGTCCAATTCCATTGTGTTCAAAGGAGAACAAGCTGCCCATCACGCCAAACGACGTATCGCAGCAACACGATGGCCTATCGCCGAGGCTTAGCACCACACCATTCATCACTGAGAACAAGCTAGCTGCCCGTCACGCCGAACGACGAATCGCAGCAACGCGATGGCCTATCACCGAGGCGCTTTATCTGCGCGACACCGTTCGGCACTGTAAGAAACAGAAATTCAATTGGCTGATGGCTGCTGGGCTGCCAGGAAAAGGCAGAAGCTTTTCTTGGGATGCTTTGTTTTGGAGGGGTCGACTCAATTTTTAA 2544 46.31 MAPTPSSKSNQSHMSQLRTPQAKRLNFHTPRAHPSPFPNSAIKDSQSEHPAEVIGRIREYPDRKEKPVSILQINPDGQNVRVRADFGYRDFSLDGISLSEEEDLDTFYKKFVQARIHGVKLGEKCTIMMYGPTGAGKSHTMFGCAKQPGIVYRSLKDILGDGESETAGGERLGVGMFVQVTVLEIYNEEIYDLLTSNSGGGLGLGWPKGSATKVKLEVMGKKAKNATYLSGNEAGKISKEIQKVEKRRIVKSTLCNERSSRSHCMIILDVPTVGGRLMLVDMAGSENIEQAGQVGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMILCASPDPKELHKTISTLEYGAKAKCIVRGPHTPTKDKCGADESASAVILGSRIAAMDDFIFKLQKENKLREKERNEAHRELLKKEEQVAELRARLEQAGSRGSGASEEEINSKVNERTEILKLELERKLEECQRMAHEFVELERRRMEERILQQQHEVETLRRRLEEIETGLLNSRNNAATSNDVVNKSRDMDGCRLAKRLLGGVYASADAGMVKSMDLDMDDQEPIIAGMDYQPSTNNGIQSLLEKVNESVDHDVVSSRFRDSDRVCLSTVLEEDDAEDEEDKEVIEEKRVVSTVMNRSQNLKERSEIGIGLINDDENSKDTAFSRKLRIQNIFTLCGNQRELSHQILSDMTNQKGGAVLAENEEAKLQPIKLAVKGGVNSPGGVDDVVVPLSPIPLCSKENKLPITPNDVSQQHDGLSPRLSTTPFITENKLAARHAERRIAATRWPITEALYLRDTVRHCKKQKFNWLMAAGLPGKGRSFSWDALFWRGRLNF 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1312524 1316530 - Cp4.1LG17g02250.1 Cpe17g00203 483521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00203 847 PANTHER KINESIN-RELATED 21 706 IPR027640 GO:0003777|GO:0007018
Cpe17g00203 847 SMART kinesin_4 48 385 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe17g00203 847 Coils Coil 466 529 - -
Cpe17g00203 847 PANTHER KINESIN-LIKE PROTEIN KIN-10A 21 706 - -
Cpe17g00203 847 Coils Coil 416 452 - -
Cpe17g00203 847 MobiDBLite consensus disorder prediction 1 49 - -
Cpe17g00203 847 PRINTS Kinesin heavy chain signature 253 270 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe17g00203 847 PRINTS Kinesin heavy chain signature 276 294 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe17g00203 847 PRINTS Kinesin heavy chain signature 326 347 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe17g00203 847 PRINTS Kinesin heavy chain signature 122 143 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe17g00203 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 384 IPR027417 -
Cpe17g00203 847 MobiDBLite consensus disorder prediction 1 23 - -
Cpe17g00203 847 ProSiteProfiles Kinesin motor domain profile. 50 377 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe17g00203 847 Pfam Kinesin motor domain 88 377 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe17g00203 847 Gene3D Kinesin motor domain 35 380 IPR036961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00203 - - K10398 csv:101206310 1229.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00130 Cpe17g00203 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00203 Cpe-Chr17:1312524 Cpe02g00747 Cpe-Chr2:4756973 3.97E-33 dispersed
Cpe12g00130 Cpe-Chr12:825503 Cpe17g00203 Cpe-Chr17:1312524 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g735 . . . . . Bpe14g01265 . . Cmo08g01050 Cmo17g00152 . . . . . . . . . . . . . . . . . . . . . Cone14ag0161 Cone15ag0172 . Cone4ag0340 . Csa02g01048 . . Blo02g00696 . . Bda13g00053 . . . . Sed09g0662 . . Cma08g01075 Cma17g00153 Car08g00947 Car17g00135 Cpe12g00130 Cpe17g00203 Bhi12g01600 Tan06g2394 Cmetu05g0124 . . . Lcy13g0389 . . . . . . . . . . Cme05g00583
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006035 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00203 Cpe_Chr17 FPKM 0.0 0.0 1.460271 3.436539 0.0 0.0 0.0 21.083918 18.365988 18.680954