Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00210 ATGGGGTCTTGTTTCGGGTTTCATAAGCGTCGGAAGAAACGCCGATCACCGGTAGATGGACTCACAGTTAGCAACCAAATACGTCTAAGCTACGAGCCTTTAGATTCCTCTCAGGTAACAACTTGTGACGTTACGGACAAACCCGAGATTCAGAATTCTAAACCAAGGGATAGATCTAAGGAGCAGGCTTGGGTGAAAATCAGGAAGAAAGTTAGCTTTAATCTAAACGTCCAGACCTACGAACCTGTTCCAGATGACCACTATTTCCTGGAGAGTGACGAAGAGGTAAAAACCGAAGAACATAGCCAAGAAGCAACAGCTAGAACTGATACTACTTCACTCCTGGACAAGGAGTTTACGACCCCGAATCCGGGAAATTACCCTCAAAACCACAGATACCAGAATTGTGCGGATAGTTGTGACGACGAAGAAGATGATTTCGGATACGGTGAAAGTGATTTGGAAGACAGTGAGATTGATGAAGAACATGATGAGTTTGAAACTAATAGTGTAGACAGGAGCCAACAAGTTCATTCTGTTCTAAAACCAATAGAAAATCTTACTCAATGGAGAACAGCTAAAGCAAAAGCAGGGACAATCAGTAAGCAGCAGATGAACAACAAGGTTAAGACATCAGAGCAGCCACAATCTCCAGCATTTTTCAGTTTAAATGAATCGACATTGAATTCGAGACTAAGTTCGAGCTTACCTGATACTCAAAAGCAAGAAAACCCGGTGCATTCGAGCCTCTCGGATTGGTTGTCTGAACTGCATAAAGGATAA 783 42.78 MGSCFGFHKRRKKRRSPVDGLTVSNQIRLSYEPLDSSQVTTCDVTDKPEIQNSKPRDRSKEQAWVKIRKKVSFNLNVQTYEPVPDDHYFLESDEEVKTEEHSQEATARTDTTSLLDKEFTTPNPGNYPQNHRYQNCADSCDDEEDDFGYGESDLEDSEIDEEHDEFETNSVDRSQQVHSVLKPIENLTQWRTAKAKAGTISKQQMNNKVKTSEQPQSPAFFSLNESTLNSRLSSSLPDTQKQENPVHSSLSDWLSELHKG 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1365472 1366863 + Cp4.1LG17g02090.1 Cpe17g00210 483528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00210 260 PANTHER FK506-BINDING NUCLEAR-LIKE PROTEIN 166 255 - -
Cpe17g00210 260 PANTHER FK506-BINDING NUCLEAR-LIKE PROTEIN 3 165 - -
Cpe17g00210 260 MobiDBLite consensus disorder prediction 142 174 - -
Cpe17g00210 260 MobiDBLite consensus disorder prediction 195 260 - -
Cpe17g00210 260 MobiDBLite consensus disorder prediction 1 21 - -
Cpe17g00210 260 MobiDBLite consensus disorder prediction 1 16 - -
Cpe17g00210 260 MobiDBLite consensus disorder prediction 38 61 - -
Cpe17g00210 260 PANTHER ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) AMIDOTRANSFERASE SUBUNIT 166 255 IPR039300 GO:0007142
Cpe17g00210 260 PANTHER ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) AMIDOTRANSFERASE SUBUNIT 3 165 IPR039300 GO:0007142
Cpe17g00210 260 MobiDBLite consensus disorder prediction 195 251 - -
Cpe17g00210 260 MobiDBLite consensus disorder prediction 142 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00210 - - - cmos:111464575 471.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g01175 Cpe-Chr12:9653549 Cpe17g00210 Cpe-Chr17:1365472 6.28E-10 dispersed
Cpe15g00098 Cpe-Chr15:740084 Cpe17g00210 Cpe-Chr17:1365472 5.46E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g766 . . . . . . . . Cmo08g01036 . . . . . . . . . . . . . . . Cla06g00689 Cam06g0740 Cec06g0747 Cco06g0758 Clacu06g0731 Cmu06g0715 Cre06g1490 . . . . . . Chy05g00299 . . . . . . . . . Sed09g0641 . . Cma08g01067 . Car08g00942 . . Cpe17g00210 Bhi12g01573 Tan06g2379 Cmetu05g0044 Lac12g2129 Hepe03g0305 . Lcy13g0401 . . . . . . . Lsi09g01203 . . Cme05g00605
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013251 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00210 Cpe_Chr17 FPKM 6.959615 9.829148 4.069709 6.215282 10.242658 6.463308 10.587229 13.044136 12.517383 11.236234