Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00211 ATGGCGTCATTAGCAGCGCATCTCTCCGCCGCCCTCTTCCTCGTTCCCATAGGCGTTCGTCGGCTACTCTGTTCTTCCTCTGTTTACATCAACAACCCATCGCTTTACCGATCAAGAACATGGTACTTATCCGAACCCAAATGGAAAAATTTCGATTTATATTCTCTGATCCTCCTCCTCCCCATTGCCGCCTTCTCTGAAATCTTCCTTTTCCTTGCATTTTCCGGGAACCCCACTTACAAATTTGCATTTTCCCACCAATCAATGGCCATTTTCTTCTTCTGGGCCCTCACGATTCTCATTATTTTGCGGGAAAATCTCGACCCTCTTCTTGTAAGTGAGAGTTTCATCTTCGTTTTCGCTGGAATCGCTTTTCTCATTGAGTATTCAGTGATTGGCAATGGTATTACTGGTCTTGGTGGCGCTTTTTATCACTTATCTAGCGGATTAGCCCTTCTTTGTGCTTGTTGTTGCCTGTATTTATCTGTGAAACCCTCTGCATTTTTCGCTGAATTTCTACTTTCTTCTGGCTTAACGTTTAAGGGTACATGGATGTTCCAAATTGGGTTGTCTTTGTATACCGATGCGTTTGCTTTGAAGGGTTGTCGTGCAATGTTGGTATTGCCTGCTACACAAGATGCTTTTGTTCAATGTGATCTTGAGGAGGATCAGATGAGGGGTATTGCTTTGATGAACTTAATATTCATTGGCCATGCTTTTTTGGTTTTGATCTTGGGTTTTGGCTTGATTGGTTTGTTGTCTTGCAACAAGCTTTTTAGGTGCCGCGAGGGGAGCGGCCCTTTGTTGGCTGAGTTTGGACAAGAAACCATGTTGAGTTCATCGTCTCCTGAGATTGAAATGGAGTGA 867 43.83 MASLAAHLSAALFLVPIGVRRLLCSSSVYINNPSLYRSRTWYLSEPKWKNFDLYSLILLLPIAAFSEIFLFLAFSGNPTYKFAFSHQSMAIFFFWALTILIILRENLDPLLVSESFIFVFAGIAFLIEYSVIGNGITGLGGAFYHLSSGLALLCACCCLYLSVKPSAFFAEFLLSSGLTFKGTWMFQIGLSLYTDAFALKGCRAMLVLPATQDAFVQCDLEEDQMRGIALMNLIFIGHAFLVLILGFGLIGLLSCNKLFRCREGSGPLLAEFGQETMLSSSSPEIEME 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1368579 1369445 - Cp4.1LG17g02150.1 Cpe17g00211 483529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00211 288 PANTHER PROTEIN, PUTATIVE-RELATED 1 285 - -
Cpe17g00211 288 Pfam Family of unknown function (DUF716) 115 246 IPR006904 -
Cpe17g00211 288 PANTHER OS11G0534100 PROTEIN 1 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00211 - - - bhj:120067159 472.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00440 Cpe-Chr4:5167188 Cpe17g00211 Cpe-Chr17:1368579 6.44E-15 dispersed
Cpe08g00895 Cpe-Chr8:7064655 Cpe17g00211 Cpe-Chr17:1368579 2.81E-06 dispersed
Cpe17g00211 Cpe-Chr17:1368579 Cpe03g00671 Cpe-Chr3:4018951 2.67E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g769 . Blo12g00138 Bda03g01093 . Bpe04g00986 . Bma04g01018 . Cmo08g01035 Cmo17g00146 . . . . . . . . . . . . . . Cla06g00690 Cam06g0741 Cec06g0748 Cco06g0759 Clacu06g0732 Cmu06g0716 Cre06g1491 . Cone15ag0181 . . . Csa02g01036 Chy05g00298 . . . . . . . . . Sed06g0389 . . Cma08g01065 Cma17g00147 Car08g00941 Car17g00129 . Cpe17g00211 Bhi12g01572 Tan06g2375 Cmetu05g0161 Lac12g2127 Hepe03g0307 . Lcy13g0403 . . . . . . . Lsi09g01202 . . Cme05g00606
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009747 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00211 Cpe_Chr17 FPKM 2.525 2.157348 25.373264 27.224941 14.546017 9.196331 10.958775 13.978975 14.597385 15.354405