Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00222 ATGGAGACCCAACAGTCAGGGAGGTTGAGATTCTCGTTTAGGAATGCGACCGTAGCTGTGTGCTTGTTGAACCTGGTGGCGGCTTTTCTTATGCTTCAGGGTTTTTTGTTTGCTGCCTCTTCCCGCAATAGATCCTCCTCCACAAACCCTAATTTGGATCAACTGAAGTATATCAGGGAATCAGAAGAGATTCGACTTGCCATGCAGCCATTGGAACTGATTAAAAGGGTAAGGGAAATTCAGCAGGAAGCATACTATGAAAGTGAAGATATACAAGAGAAAGACTCCAAGCAGAATGCTGCCATTGATCTTTCTAAGAGATTGAAAGACTTCCGTTCTCTCAATGATGCTTCCAACTTAAAAGATCAACTGAAGTATATCAGGGAATCAGAAGAGATTCGACTTGCCATGCAGCCATTGGAACTGATTAAAAGGGTAAGGGAAATTCAGCAGGAAGCATACTATGAAAGTGAAGATATACAAGAGAAAGACTCCAAGCAGAATGCTGCCATTGATCTTTCTAAGAGATTGAAAGACTTCCGTTCTCTCAATGATGCTTCCAACTTAAAAGCTTTGGAGGAATGGCGGAAAAGGAAGATGGAAAGAGCAAGAGTGCGAGAAATGGAGAAAAATGGGACACTGAGATCCCCAACTTCTAAATCCGTATGA 669 42.3 METQQSGRLRFSFRNATVAVCLLNLVAAFLMLQGFLFAASSRNRSSSTNPNLDQLKYIRESEEIRLAMQPLELIKRVREIQQEAYYESEDIQEKDSKQNAAIDLSKRLKDFRSLNDASNLKDQLKYIRESEEIRLAMQPLELIKRVREIQQEAYYESEDIQEKDSKQNAAIDLSKRLKDFRSLNDASNLKALEEWRKRKMERARVREMEKNGTLRSPTSKSV 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1406239 1412533 + Cp4.1LG17g02030.1 Cpe17g00222 483540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00222 222 PANTHER OS02G0761600 PROTEIN 123 216 - -
Cpe17g00222 222 PANTHER OS02G0761600 PROTEIN 8 121 - -
Cpe17g00222 222 MobiDBLite consensus disorder prediction 203 222 - -
Cpe17g00222 222 PANTHER TRANSMEMBRANE PROTEIN 123 216 - -
Cpe17g00222 222 PANTHER TRANSMEMBRANE PROTEIN 8 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00222 - - - csv:101209470 190.274
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00222 Cpe-Chr17:1406239 Cpe07g00468 Cpe-Chr7:3007208 2.23E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g799 . . . Bda08g00007 . . . Bma05g01258 Cmo08g01026 . . . . . . . . . . . . . . . Cla06g00703 Cam06g0754 Cec06g0760 Cco06g0772 Clacu06g0745 Cmu06g0728 Cre06g1505 . . . . . Csa02g01020 Chy05g00284 . . . . . Bpe05g01112 . . . . . . Cma08g01055 . . . . Cpe17g00222 . . . . . . . . . . . . . . Lsi09g01190 . . Cme05g00625
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011927 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 1 0 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00222 Cpe_Chr17 FPKM 0.785094 0.273682 1.004414 1.026017 4.738093 5.054806 4.491818 2.159157 2.860088 2.405173