Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00226 ATGCACCGCTTCGCTTCAGGCCTCGCTTCGAAAGCTCGCCTTGCTAGGAAGGGTGCCAATCAGATTGCTAGTAGGTCGAGCTGGAGCAGAAACTATGCCGCTAAAGACGTTAAATTTGGGGTGGAGGCTCGAGGACTTATGCTTAAGGGTGTTGAGGATCTTGCTGATGCCGTTAAAGTCACAATGGGTCCTAAGGGGCGCAATGTTGTGATTGAACAGAGTTATGGGGCTCCCAAGGTTACAAAAGATGGTGTGACTGTTGCAAAGAGTATCGAGTTTAAAGATAAGGTTAAAAATGTTGGTGCCAGTCTTGTGAAGCAGGTTGCTAATGCAACAAATGATGTAGCTGGTGATGGGACCACTTGTGCTACTATTCTTACGAGAGCAATATTTACGGAGGGCTGCAAGTCCGTTGCTGCTGGAATGAATGCCATGGATCTAAGACGTGGTATTTCAATGGCAGTCGATTCTGTTGTGACAAACTTGAAGAGTAGAGCACGAATGATAAGCACATCAGAAGAGATAGCCCAGGTCGGAACAATATCTGCCAACGGAGAAAGAGAAATTGGTGAGTTGATTGCCAAGGCCATGGAGAAAGTTGGCAAGGAGGGCGTGATCACCATCTCGGATGGGAAGACATTGTTTAATGAGTTGGAAGTTGTTGAAGGGATGAAGTTAGATAGGGGATACATTTCTCCTTACTTCATTACTAACCAAAAGAACCAAAAATGTGAGTTGGATGATCCTCTTATTCTAATCCATGAAAAGAAAATCTCTAGCATTAACTCTGTGGTGAAAGTTTTAGAGTTGGCTCTGAAGAGGCAAAGGCCCCTTCTTATCGTTTCTGAAGATGTCGAAAGTGATGCACTAGCCACTCTTATCTTGAATAAGCTCCGTGCTGGAATTAAGGTCTGTGCCATTAAAGCACCAGGTTTTGGTGAAAATAGGAAGGCTGGACTGCACGACCTTGCAGTTCTCACGGGTGGTCAGCTCATTACTGAAGAGCTTGGCATGAATCTTGAAAAAGTTGATCTGGATATGCTTGGCTCTTGCAAGAAGATCACAATTTCAAAGGACGATACAGTAATTCTAGATGGCGCTGGTGACAAGAAGTCTATCGAGGAAAGATGTGAACAGATAAGGTCAGCTATTGAACTGAGCACTTCTGATTATGACAAGGAGAAGTTACAGGAAAGATTAGCGAAGCTCTCTGGTGGTGTAGCTGTATTGAAGATTGGAGGAGCAAGTGAGGCAGAAGTAGGTGAGAAGAAGGATAGAGTCACTGATGCCTTGAATGCCACAAAAGCAGCTGTTGAAGAAGGAATTGTACCAGGTGGTGGTGTTGCTCTTTTGTATGCATCGAAAGAACTAGATAAACTTTCAACGGCTAACTTCGATCAGAAAATTGGTGTTCAAATTATTCAGAATGCTCTAAAGACACCCGTACACACAATTGCATCGAATGCGGGAGTTGAGGGGGCTGTCGTGGTTGGGAAGCTGTTGGAGCAGGACAACCCTGATCTTGGTTACGATGCTGCAAAAGGTGAATATGTGGATATGATCAAAGCTGGCATCATTGATCCTCTTAAAGTAATTAGAACTGCACTAGTCGATGCCGCTAGCGTTTCCTCTTTGATGACAACTACGGAAGCCATTGTAGTCGAACTCCCCAAGGATGAAAAGGAAGTTCCAGCAATGGGTGGCGGCATGGGAGGAATGGATTACTAA 1728 44.62 MHRFASGLASKARLARKGANQIASRSSWSRNYAAKDVKFGVEARGLMLKGVEDLADAVKVTMGPKGRNVVIEQSYGAPKVTKDGVTVAKSIEFKDKVKNVGASLVKQVANATNDVAGDGTTCATILTRAIFTEGCKSVAAGMNAMDLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLFNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLILIHEKKISSINSVVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKAGLHDLAVLTGGQLITEELGMNLEKVDLDMLGSCKKITISKDDTVILDGAGDKKSIEERCEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLSTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKDEKEVPAMGGGMGGMDY 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1450142 1454698 - Cp4.1LG17g02230.1 Cpe17g00226 483544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00226 575 SUPERFAMILY GroEL equatorial domain-like 38 553 IPR027413 -
Cpe17g00226 575 ProSitePatterns Chaperonins cpn60 signature. 436 447 IPR018370 GO:0005524|GO:0006457
Cpe17g00226 575 Hamap Chaperonin GroEL [groEL]. 33 573 IPR001844 GO:0042026|GO:0140662
Cpe17g00226 575 Gene3D - 37 554 IPR027413 -
Cpe17g00226 575 SUPERFAMILY GroEL-intermediate domain like 169 235 IPR027410 -
Cpe17g00226 575 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 15 568 - -
Cpe17g00226 575 Pfam TCP-1/cpn60 chaperonin family 54 555 IPR002423 GO:0005524
Cpe17g00226 575 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 15 568 - -
Cpe17g00226 575 PRINTS 60kDa chaperonin signature 58 84 IPR001844 GO:0042026|GO:0140662
Cpe17g00226 575 PRINTS 60kDa chaperonin signature 114 141 IPR001844 GO:0042026|GO:0140662
Cpe17g00226 575 PRINTS 60kDa chaperonin signature 299 322 IPR001844 GO:0042026|GO:0140662
Cpe17g00226 575 PRINTS 60kDa chaperonin signature 381 406 IPR001844 GO:0042026|GO:0140662
Cpe17g00226 575 PRINTS 60kDa chaperonin signature 429 450 IPR001844 GO:0042026|GO:0140662
Cpe17g00226 575 TIGRFAM GroEL: chaperonin GroL 34 558 IPR001844 GO:0042026|GO:0140662
Cpe17g00226 575 CDD GroEL 35 555 IPR001844 GO:0042026|GO:0140662
Cpe17g00226 575 Gene3D GroEL 223 404 IPR027409 -
Cpe17g00226 575 Gene3D - 168 441 IPR027410 -
Cpe17g00226 575 SUPERFAMILY GroEL apical domain-like 216 407 IPR027409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00226 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - csv:101210207 1064.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00226 Cpe-Chr17:1450142 Cpe18g00272 Cpe-Chr18:4326061 7.96E-148 dispersed
Cpe12g00617 Cpe-Chr12:6113308 Cpe17g00226 Cpe-Chr17:1450142 0 transposed
Cpe17g00973 Cpe-Chr17:7438060 Cpe17g00226 Cpe-Chr17:1450142 0 transposed
Cpe12g00111 Cpe-Chr12:706688 Cpe17g00226 Cpe-Chr17:1450142 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g828 Blo01g00313 Blo12g00132 Bda03g01108 . Bpe04g01053 . Bma04g01034 Bma05g01268 . . . . . . . . . . . . . . . . Cla06g00710 Cam06g0764 Cec06g0768 Cco06g0779 Clacu06g0752 Cmu06g0735 Cre06g1515 Cone14ag0201 Cone15ag0219 . Cone4ag0377 . . . . . . . . Bpe05g01123 . . . . . . . . . . . Cpe17g00226 Bhi12g01535 . . Lac12g2109 . . . . . . . . . . . . . Cme05g00632
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000827 3 3 3 3 3 3 4 3 3 2 3 3 4 2 3 4 3 5 4 3 3 2 3 3 3 2 3 4 2 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00226 Cpe_Chr17 FPKM 16.084803 20.793697 12.970947 13.99663 59.938248 45.117764 58.468338 69.761505 71.852158 73.375153