Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00239 ATGGCGGCTCCAAACTGCACACTGACTTTGGCTCAGCTCCTCGGCCCCAATGTCACGAACTCCGGCGCCGCAGCCTCCTTCATCTGCGATCAATTCTCTACAACCACCACCAACTTCTCCGACACCAAATTCGCCGTCGACACCGTCTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCTATGCAACTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGTGCTAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCTGCCGCCGGCGGCCTCTTTTACTACCTCTTCGGCTTCGCCTTTGCCTTCGGCAGCCCCTCCAACGCCTTCATCGGCCGCCATTTCTTCGGCCTCAAGTCAATCCCCTCCGCCACACCCACCCCCACCGATTATAGCTTCTTCCTTTATCAATGGGCTTTCGCCATCGCCGCCGCCGGCATCACCAGCGGTTCAATTGCCGAGCGGACCCAATTCGTTGCCTATTTGATCTACTCCTCTGTTTTGACCGGCTTTGTTTACCCGGTGGTTTCCCACTGGTTTTGGTCTCCAGACGGTTGGGCCAGCCCCTCCCGGTCCAATGGAAATCTCTTATTCGGAACCGGAGTCATCGATTTTGCCGGTTCGGGCGTGGTTCACATGGTGGGTGGAATCGCCGGACTTTGGGGTGCTTTAATAGAAGGCCCAAGAATCGGTCGGTTCGAAAAAACCGGACGATCCGTTGCGTTACGAGGCCATAGTGCTACGTTAGTCGTTCTCGGTACCTTCATGCTTTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCATTCACCAAAATCCTCGTTCCGTACGGTGTGGGTGATTTCTACGGACAGTGGAGCGCCGTCGGTCGGACAGCCGTTACAACCACCCTCGCCGGTTGCACAGCAGCGTTGACTACCCTTTTTGGAAAAAGAATTCTCTCCGGTCACTGGAACGTCACCGACGTCTGCAACGGATTACTCGGCGGCTTCGCCGCCATAACCTCCGGCTGCTCAGTGGTGGAGCCATGGGCGGCAGTGATATGCGGATTTGTGGCAGCGTTGGTGTTAATCAGCTTGAATAAACTGGCGGAGAAGGTGAAATTTGATGACCCATTGGAGGCAGCACAATTGCACGGCGGGTGCGGCGCGTGGGGTATAATTTTCACAGCATTGTTCGCGACAAAGGAGTATGTGAACGAGGTGTACGGCGGAGAGATCGGGCGGCCACACGGGTTGTTCATGGGCGGCGGAGGGAAGTTGCTGGCGGCGCATCTGATACAGATTTTGGTGATTACTGGGTGGGTAAGCATCACAATGGGACCATTGTTTTTCGGGCTTCATAAACTGAAGCTACTGAGAATCTCGCCGGCGGATGAGATGGCCGGAATGGACATGACACGTCACGGTGGATTTGCTTACGTGTACCATGATGAAGATGAGTCACCAGCGAATGGGGTCCAGATGAGAAGGATTGAGCCAAGGGACACCAGGACAAAATGTGGGTTCTAA 1515 55.45 MAAPNCTLTLAQLLGPNVTNSGAAASFICDQFSTTTTNFSDTKFAVDTVYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGSPSNAFIGRHFFGLKSIPSATPTPTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWASPSRSNGNLLFGTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFEKTGRSVALRGHSATLVVLGTFMLWFGWYGFNPGSFTKILVPYGVGDFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVICGFVAALVLISLNKLAEKVKFDDPLEAAQLHGGCGAWGIIFTALFATKEYVNEVYGGEIGRPHGLFMGGGGKLLAAHLIQILVITGWVSITMGPLFFGLHKLKLLRISPADEMAGMDMTRHGGFAYVYHDEDESPANGVQMRRIEPRDTRTKCGF 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1548409 1550191 - Cp4.1LG17g03140.1 Cpe17g00239 483557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00239 504 ProSitePatterns Ammonium transporters signature. 206 231 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cpe17g00239 504 PANTHER AMMONIUM TRANSPORTER 6 497 - -
Cpe17g00239 504 Pfam Ammonium Transporter Family 50 475 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cpe17g00239 504 SUPERFAMILY Ammonium transporter 46 456 - -
Cpe17g00239 504 TIGRFAM amt: ammonium transporter 47 475 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cpe17g00239 504 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 6 497 - -
Cpe17g00239 504 Gene3D Ammonium transporter AmtB like domains 26 493 IPR029020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01238 Cpe-Chr8:8977126 Cpe17g00239 Cpe-Chr17:1548409 9.09E-22 dispersed
Cpe11g00346 Cpe-Chr11:1878520 Cpe17g00239 Cpe-Chr17:1548409 2.72E-24 dispersed
Cpe07g00817 Cpe-Chr7:7351775 Cpe17g00239 Cpe-Chr17:1548409 0 transposed
Cpe17g00239 Cpe-Chr17:1548409 Cpe03g01554 Cpe-Chr3:12071023 0 wgd
Cpe17g00239 Cpe-Chr17:1548409 Cpe05g00094 Cpe-Chr5:459595 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00239 K03320 - csv:101212168 906.746