Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00243 ATGGCGGCACTCAGCAAATGGTCTTCTCTGTCTCTGCTTGCGCTTGCAATGGTGTTCTTCGTAACAATGGCTCTGGTTCGCAAAGAAGAGGTCTCTGAAATTAGGACTGTGTTAGCGACGAAGTTTCAGAGCTCTATCAACTCATCAATGGCGACTAGGGCGGTGAATGATGATTCGGAGGAGCTTAACAATGAGCATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGCATCCGTAACAGCACTGAAAGGAGAAAATTGGGATTTTTCTCCTGTGGAACTGGCAATCCCATTGATGACTGTTGGCGTTGCGACCCCAATTGGCACCACAAACGTAAACGCCTAGCTGAATGTGGCATTGGGTTCGGCCGGAATGCTATCGGTGGTCGTGATGGTCGTTTCTACGTTGTCACTGATTCAAGCGACAACGATCCGGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATCGTATTCAAAAGGGACATGGTGATTCAATTGAAACAAGAACTCATCATGAACAGTTTTAAGACCATTGATGCTCGCGGGGTCAATGTACACATCGCCAATGGCGCTTGCATCACAATACAGTTTGTGACCAATATCATTATCCACGGTCTTCACATCCATGATTGCAAGCCCACAGGAAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGCGATGCCATTTCCATCTTTGGGTCAAGCCATATATGGATCGACCACAATTCACTCTCTAATTGTGCCGATGGCCTTGTTGATGCTGTCATGGGCTCAACTGCAATCACCATCTCCAACAATCACTTCACCCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGACTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCATTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGAAACAGATATGCTGCTCCAACCAACCCTTTTGCCAAGGAGGCGCTGGAGCTTCAGCAAGCTATGCGAGAGCCTCCAGCTTAG 1167 47.47 MAALSKWSSLSLLALAMVFFVTMALVRKEEVSEIRTVLATKFQSSINSSMATRAVNDDSEELNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDPNWHHKRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEALELQQAMREPPA 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1588320 1592293 - Cp4.1LG17g03220.1 Cpe17g00243 483561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00243 388 Pfam Pectate lyase 186 363 IPR002022 -
Cpe17g00243 388 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Cpe17g00243 388 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Cpe17g00243 388 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Cpe17g00243 388 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Cpe17g00243 388 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Cpe17g00243 388 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Cpe17g00243 388 Gene3D - 99 385 IPR012334 -
Cpe17g00243 388 PANTHER PECTATE LYASE 18 376 - -
Cpe17g00243 388 SMART amb_all 174 371 IPR002022 -
Cpe17g00243 388 SUPERFAMILY Pectin lyase-like 76 376 IPR011050 -
Cpe17g00243 388 PANTHER PECTATE LYASE 18-RELATED 18 376 IPR045032 GO:0030570
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00382 Cpe17g00243 CCT
Cpe08g00382 Cpe17g00243 ECH
Cpe12g00102 Cpe17g00243 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00122 Cpe-Chr15:968547 Cpe17g00243 Cpe-Chr17:1588320 1.04E-179 dispersed
Cpe17g00243 Cpe-Chr17:1588320 Cpe20g00339 Cpe-Chr20:1918062 0 dispersed
Cpe12g00102 Cpe-Chr12:619595 Cpe17g00243 Cpe-Chr17:1588320 0 wgd
Cpe17g00243 Cpe-Chr17:1588320 Cpe03g01570 Cpe-Chr3:12149997 5.04E-08 wgd
Cpe17g00243 Cpe-Chr17:1588320 Cpe05g00107 Cpe-Chr5:547453 0 wgd
Cpe17g00243 Cpe-Chr17:1588320 Cpe08g00382 Cpe-Chr8:2377087 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00243 K01728 - csv:101217580 711.835