Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe17g00243 | ATGGCGGCACTCAGCAAATGGTCTTCTCTGTCTCTGCTTGCGCTTGCAATGGTGTTCTTCGTAACAATGGCTCTGGTTCGCAAAGAAGAGGTCTCTGAAATTAGGACTGTGTTAGCGACGAAGTTTCAGAGCTCTATCAACTCATCAATGGCGACTAGGGCGGTGAATGATGATTCGGAGGAGCTTAACAATGAGCATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGCATCCGTAACAGCACTGAAAGGAGAAAATTGGGATTTTTCTCCTGTGGAACTGGCAATCCCATTGATGACTGTTGGCGTTGCGACCCCAATTGGCACCACAAACGTAAACGCCTAGCTGAATGTGGCATTGGGTTCGGCCGGAATGCTATCGGTGGTCGTGATGGTCGTTTCTACGTTGTCACTGATTCAAGCGACAACGATCCGGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATCGTATTCAAAAGGGACATGGTGATTCAATTGAAACAAGAACTCATCATGAACAGTTTTAAGACCATTGATGCTCGCGGGGTCAATGTACACATCGCCAATGGCGCTTGCATCACAATACAGTTTGTGACCAATATCATTATCCACGGTCTTCACATCCATGATTGCAAGCCCACAGGAAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGCGATGCCATTTCCATCTTTGGGTCAAGCCATATATGGATCGACCACAATTCACTCTCTAATTGTGCCGATGGCCTTGTTGATGCTGTCATGGGCTCAACTGCAATCACCATCTCCAACAATCACTTCACCCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGACTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCATTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGAAACAGATATGCTGCTCCAACCAACCCTTTTGCCAAGGAGGCGCTGGAGCTTCAGCAAGCTATGCGAGAGCCTCCAGCTTAG | 1167 | 47.47 | MAALSKWSSLSLLALAMVFFVTMALVRKEEVSEIRTVLATKFQSSINSSMATRAVNDDSEELNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDPNWHHKRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEALELQQAMREPPA | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 1588320 | 1592293 | - | Cp4.1LG17g03220.1 | Cpe17g00243 | 483561 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe17g00243 | 388 | Pfam | Pectate lyase | 186 | 363 | IPR002022 | - | |
Cpe17g00243 | 388 | PRINTS | Pollen allergen Amb family signature | 348 | 367 | IPR018082 | - | |
Cpe17g00243 | 388 | PRINTS | Pollen allergen Amb family signature | 326 | 345 | IPR018082 | - | |
Cpe17g00243 | 388 | PRINTS | Pollen allergen Amb family signature | 146 | 171 | IPR018082 | - | |
Cpe17g00243 | 388 | PRINTS | Pollen allergen Amb family signature | 122 | 139 | IPR018082 | - | |
Cpe17g00243 | 388 | PRINTS | Pollen allergen Amb family signature | 182 | 198 | IPR018082 | - | |
Cpe17g00243 | 388 | PRINTS | Pollen allergen Amb family signature | 246 | 267 | IPR018082 | - | |
Cpe17g00243 | 388 | Gene3D | - | 99 | 385 | IPR012334 | - | |
Cpe17g00243 | 388 | PANTHER | PECTATE LYASE | 18 | 376 | - | - | |
Cpe17g00243 | 388 | SMART | amb_all | 174 | 371 | IPR002022 | - | |
Cpe17g00243 | 388 | SUPERFAMILY | Pectin lyase-like | 76 | 376 | IPR011050 | - | |
Cpe17g00243 | 388 | PANTHER | PECTATE LYASE 18-RELATED | 18 | 376 | IPR045032 | GO:0030570 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe08g00382 | Cpe17g00243 | CCT | |
Cpe08g00382 | Cpe17g00243 | ECH | |
Cpe12g00102 | Cpe17g00243 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe15g00122 | Cpe-Chr15:968547 | Cpe17g00243 | Cpe-Chr17:1588320 | 1.04E-179 | dispersed | |
Cpe17g00243 | Cpe-Chr17:1588320 | Cpe20g00339 | Cpe-Chr20:1918062 | 0 | dispersed | |
Cpe12g00102 | Cpe-Chr12:619595 | Cpe17g00243 | Cpe-Chr17:1588320 | 0 | wgd | |
Cpe17g00243 | Cpe-Chr17:1588320 | Cpe03g01570 | Cpe-Chr3:12149997 | 5.04E-08 | wgd | |
Cpe17g00243 | Cpe-Chr17:1588320 | Cpe05g00107 | Cpe-Chr5:547453 | 0 | wgd | |
Cpe17g00243 | Cpe-Chr17:1588320 | Cpe08g00382 | Cpe-Chr8:2377087 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe17g00243 | K01728 | - | csv:101217580 | 711.835 |