Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00245 TGGTTTCCGGCTCCAAATCACGCCACGTGTTACTTCCATGGCCAAATGGTCTCTCGGTCCTCATTCTTTGATGCATATTCGCCCATCAACAACCACAACCACCAGCACCATTTAGCTAACGAAGTCAATTCAGTTCTCTGCAGACGCCATTCTTCTCTTCCTTCTGCCGATTCACACTTCGACTCTGACTCTTCCGCCATGGACGCAGCAGCACCACAGCTCGTCTCTTGCGGAATCGACACCATTCGCTGCCGAACCTTACCATCGCGCCTTCAGTTTCCCAAACCAATCGTCAGAACTCGCAGGCGTGCCGGTAAGGTTCTTGCGGTTGCGACTGACCCGAAATCGACGCGGAATGAGTCCATGAATTCGTCTCCAACGAAGTCCGTCAATGGATCAGCGAGATCCCCTCCGGCTCCTAAAGCTGTTAACGGAGTTTCCACTAGAATTGGAGATGTTTCGAAGGAAATTAAAAGAGTTAGAGCCCAGATGGAAGAAAATGAAGAGCTGGCAATACTCATGAGAGGACTACGGGGACAGAATCTAAAAGATTCCCTTTTTGCAGAGGATAATGTTGAGCTCCGCCTTGTTGAGGTAGATGAGAGCAGCGAGTTTTTGCCTTTGGCTTATGATCCTGATAGCATATCTGCATATTGGGGGAAAAGACCACAGGCTGTGGCAACACGAATTGTTCAGTTGCTTTCTGTTGCTGGAGGCTTTCTCTCACATATTGTCTGGGACATCATAAACAAGAAAGTTAAGGAGAATGAAGTTGAAAGAGCAATTGAATTAAGGGAAATTGTGACCTCGTTGGGTCCAGCATATATTAAACTAGGACAAGCTCTGAGTATTCGACCAGATATACTGTCACCTGCTGCAATGACTGAGTTACAAAAGCTTTGTGATAAGGTTCCTTCATTTCCCGATGATGTTGCTATGAGTCTTATTGAAGAGGAACTTGGTCAACCATGGCAAAACATTTATTCGGAACTTTCTCCTTCCCCAATTGCTGCTGCTTCTTTAGGGCAGGTATACAAAGGTCGTTTGAAAGAAAACGGAGATCTGGTGGCTGTTAAAGTTCAGAGGCCTTTCGTTCTAGAGACTGTAACTATTGATTTGTTTATCATACGGAATTTGGGCTTGGTTCTTCGGAAGTTTCCTCAGGTGGTTGTTCCAAAAACATACCAAAAATATACTTCAAGGAAGGTTCTCACTACTGGATGGATAGACGGAGAGAAGCTGTCCCAAAGTACGGAAAGTGATGTTGGGGAACTTGTGAATGTGGGAGTCATATGCTACCTAAAGCAGTTACTTGACACTGGATTCTTCCATGCTGATCCTCATCCTGGGAATTTGATCCGTACTCCAGATGGAAAGTTGGCCGTACTTGACTTCGGTTTAGTCACGAAGTTAACTGATGATCAGAAGTATGGAATGATTGAAGCAATTGCACATCTCATTCATCGAGATTATTCGGCTATTGTCAAAGACTTTGTTAAGCTTGGTTTTATTCCAGAGGGTGTTAATTTGGAACCAATCTTGCCAGTCCTAGCAAAAGTTTTCGATCAGGCTCTTGAGGGTGGAGGTGCAAAGAATATCAACTTCCAGGAGCTGGCTTCAGATTTAGCTCAGATAACATTTGATTATCCATTTCGGATACCTCCATATTTTGCTCTTATAATCAGGGCAATTGGGGTTCTAGAAGGAATAGCTTTGGTGGGAAACCCTGATTTTGCCATCGTGGATGAGGCATATCCTTATATTGCACAGAGACTTCTGACTGATGAGTCTCCAAGGTTAAGGAGTGCTTTACGATACACAATCTACGGGAGATCCGGAGTATTTGATGCTGAGAGATTCATTGATGTTATGCAAGCCTTCGAGAATTTCATTACTGCAGCTAAAAGTGGGGGCGGAGAGGATTTAAGTGGAGATATGGCCGGGCTTGGTGGTCTGAAAAGTCAAACATCATCTTCCTTTCTTCAACTTCTTCCTGCTCCCCGTGAATTCGAGCAGAATCAACCTATTGAAACAAGAGCATCCTTGGCCTTTTTGCTGTCTGATAGAGGGAACTTCTTTCGGGAATTTCTTCTTGATGAGATTGTGAAGGGCATTGATGCAGTCACAAGGGAGCAGTTAGTACGTTTAATGTCAATCTTTGGACTTAGAAATGCTACACCAGTTTTTAATATGGTTCCTTCCATTGGACCATTCAAGCCTGTCGCACTTCTACCCACAGTATCAGAAGAAGACAGAGTCATACTAAATAATGTTCAAAAGATTCTCGAGTTCTTAACGGCGGGAAGTTCAATCTCAGCAACATCTAAAGAGGGTGCGGATGTTGTTCGAGTTATTCAAGAGCTTCTTCCAGTTTTGCCAGGCATCTCCACTACAGTTCTTCCTGAGGTGCTCAGTCGATTATCTTCCCGGGTATTCGCCCGATTAATTCGTGATGCATTGTTATGA 2466 44.24 WFPAPNHATCYFHGQMVSRSSFFDAYSPINNHNHQHHLANEVNSVLCRRHSSLPSADSHFDSDSSAMDAAAPQLVSCGIDTIRCRTLPSRLQFPKPIVRTRRRAGKVLAVATDPKSTRNESMNSSPTKSVNGSARSPPAPKAVNGVSTRIGDVSKEIKRVRAQMEENEELAILMRGLRGQNLKDSLFAEDNVELRLVEVDESSEFLPLAYDPDSISAYWGKRPQAVATRIVQLLSVAGGFLSHIVWDIINKKVKENEVERAIELREIVTSLGPAYIKLGQALSIRPDILSPAAMTELQKLCDKVPSFPDDVAMSLIEEELGQPWQNIYSELSPSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTIDLFIIRNLGLVLRKFPQVVVPKTYQKYTSRKVLTTGWIDGEKLSQSTESDVGELVNVGVICYLKQLLDTGFFHADPHPGNLIRTPDGKLAVLDFGLVTKLTDDQKYGMIEAIAHLIHRDYSAIVKDFVKLGFIPEGVNLEPILPVLAKVFDQALEGGGAKNINFQELASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNPDFAIVDEAYPYIAQRLLTDESPRLRSALRYTIYGRSGVFDAERFIDVMQAFENFITAAKSGGGEDLSGDMAGLGGLKSQTSSSFLQLLPAPREFEQNQPIETRASLAFLLSDRGNFFREFLLDEIVKGIDAVTREQLVRLMSIFGLRNATPVFNMVPSIGPFKPVALLPTVSEEDRVILNNVQKILEFLTAGSSISATSKEGADVVRVIQELLPVLPGISTTVLPEVLSRLSSRVFARLIRDALL 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1600140 1608642 - Cp4.1LG17g03210.1 Cpe17g00245 483563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00245 821 Pfam ABC1 atypical kinase-like domain 383 496 IPR004147 -
Cpe17g00245 821 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 387 819 - -
Cpe17g00245 821 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 98 389 - -
Cpe17g00245 821 Gene3D Transferase(Phosphotransferase) domain 1 314 486 - -
Cpe17g00245 821 Coils Coil 150 170 - -
Cpe17g00245 821 CDD ABC1_ADCK3-like 299 498 - -
Cpe17g00245 821 SUPERFAMILY Protein kinase-like (PK-like) 302 494 IPR011009 -
Cpe17g00245 821 MobiDBLite consensus disorder prediction 114 134 - -
Cpe17g00245 821 MobiDBLite consensus disorder prediction 112 146 - -
Cpe17g00245 821 PANTHER PROTEIN KINASE-LIKE DOMAIN 387 819 - -
Cpe17g00245 821 PANTHER PROTEIN KINASE-LIKE DOMAIN 98 389 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00245 K08869 ADCK, ABC1; aarF domain-containing kinase - csv:101212546 1326.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00916 Cpe-Chr6:6417285 Cpe17g00245 Cpe-Chr17:1600140 1.00E-53 dispersed
Cpe11g00554 Cpe-Chr11:3288622 Cpe17g00245 Cpe-Chr17:1600140 1.51E-88 dispersed
Cpe17g00245 Cpe-Chr17:1600140 Cpe19g00791 Cpe-Chr19:5981307 1.15E-45 dispersed
Cpe17g00245 Cpe-Chr17:1600140 Cpe16g00378 Cpe-Chr16:5413833 8.43E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g879 . Blo12g00123 Bda03g01118 . Bpe04g01062 . . . Cmo08g01004 . . . . . . . . . . . . . . . Cla06g00742 Cam06g0795 Cec06g0800 . Clacu06g0794 Cmu06g0767 Cre06g1548 . . . . . . Chy05g00545 . . . . . . . . . Sed09g0191 . . Cma08g01034 . . . . Cpe17g00245 Bhi12g01511 Tan06g2320 Cmetu05g0760 Lac12g2067 Hepe03g0344 . Lcy13g0450 . . . . . . . Lsi09g01157 . . Cme05g00693
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009075 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 4 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00245 Cpe_Chr17 FPKM 13.646341 16.513828 14.690722 22.012117 19.124893 21.581583 21.645348 29.287632 26.216368 34.444183