Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00250 ATGTTTTCAAACCTTTCCTCCAAAACCTCCCTTCATGTCCACACTATCTCTTCCCTGTCTTCTTCTTCTTCATCAAACATGAAACTTAACCGCCTCTGTTTCCTTAAACCGGCGGACTTCAACGAAGTCCAGCCGTTTGATCGTGAAGAGCTTCAAAAACCCAGTAATGAACAACAACAAAACAAACAGCATCGCAATCGAGATTGTTGGTCTCAATTTCAAGCCTTTCTCCGAGATTCCTTCTTCAAATTCCAAGACCTCAAAAGGGCTACTTCCTGTTGCTACGGCGGATCCACACAGTTGACGCCGTCCGTCGGTGGCGGCGGTGTGTTTCACGACACCGATGGGGTGCAGCTTTCTGAGAAAGTCGGCGGTGACAACCCCAGAATCTTCAGCTTTGCGGAGCTTTATATTGGAACCAAAGGGTTCTGTGCAGAGGAAATTCTTGGCAGTGGGGGATTTGGGAAAGTTTACAGAGCGAATTTGCCTAGTGATGGAACTCTGGTGGCTGTGAAATGTTTGGCTGAAAAAGGGGAGAAGTTTGAGAAGACGTTTGTGGCGGAGCTGGTGGCGTTCCGACTGGTGGAAACCACCAAAATAGGCGGCACAATTGGGTATCTCCCACCGGAGAGTTTCCAGAAAAGAAGCATTGCCACTGCAAAATCTGATGTTTTCAGCTTTGGAATTGTGGTTCTTGAGGTGATCTCTGGGCGGCGGGCAGTGGACCTTACATGTCCTGATGATCAGATTATCTTGCTCGATTGGATTCGAAAGCTCTCCGACGACGGTACGCTGCTGCTCGCCGGTGATAGCCGGCTGCCAGATGGGTCTTATAACCTGATTGAAATGGAGCGTTTGATCCATTTGGGTCTTCTCTGTACACTCCATAGCCCACAGTATAGGCCAAGTATGAAATGGGTTGTGGAAGCATTTTCCGGTGGTCTGATGGGGAATTTGCCGGCTCTGCCGTCGTTTCAGTCTCATCCTCAGTACATTTCTCTGTCTTCCCCCACCGGTGGCAGTACAACTAGAAGCACTAGCAGCAGCATAACCACGGCGACAAGATCAGACACAACAACAATCACAGTTAATTGCTCAGATTTTGCATCAGCCAATGGAGAAACCATATATATGACTGCTGAGAATGGCATCAATAACAATTATACCAACAATTCTGATAGGTTTCTTGACAGATCAAAAACCATTCAAATGATTGAAACTCCAAGAGAAATATCATTCAAGGAGATTATTTCAGCCACCAATAACTTCTCCGATTCGCAGCGGGTGGCCGAGCTCGATTTCGGAACTGCCTACCATGGCTTCCTTGACAGCAGCCACCATGTTCTAGTGAAGCGGCTTGGAATGAAAACTTGTCCTGCGCTAAGGGAGAGATTCTCGAATGAACTCCTAAACTTAGGCCGGCTTCGCCATAGAAACTTGATTCAGCTTCGTGGGTGGTGCACAGAACAAGGGGAGATGCTTGTGGTGTATGATTATTCAGCTGACCGTCTCTTGAGCCACCTGCTTTTCCACCATGACAAAGGAGCTTTACAATGGTGCCATAGATACAACATTATCAAATCTCTGGCTTCTGCAATTCTGTATCTTCATGAGGAATGGGATGAACAAGTCATCCACAGGAACATCACTTCATCAGCTGTTATACTAGATCCTGATCTTAACCCAAGGCTGAGTTCTTTCGCTCTTGCAGAATTCCTAACAAGAAACGAGCATGGCAATCATCACACTGGATGGAGATTACAACCACCAAGAACTGATGAGACTGCTGAGATTAGGAATCACTTGCACTCATTCAAACCCAGATTCAAGACCAAAAATGAGGCAGATAACGGAAATGACCAATGCTTCTCTAAAGAACAAAGAATGGAAAGCATAGAAGGTTGGAAACAGAGAAATGCAACTTCTCTGTCACTGGTTAAGAGGATCCAAGCTCTGGGAATACAGTGA 1968 46.29 MFSNLSSKTSLHVHTISSLSSSSSSNMKLNRLCFLKPADFNEVQPFDREELQKPSNEQQQNKQHRNRDCWSQFQAFLRDSFFKFQDLKRATSCCYGGSTQLTPSVGGGGVFHDTDGVQLSEKVGGDNPRIFSFAELYIGTKGFCAEEILGSGGFGKVYRANLPSDGTLVAVKCLAEKGEKFEKTFVAELVAFRLVETTKIGGTIGYLPPESFQKRSIATAKSDVFSFGIVVLEVISGRRAVDLTCPDDQIILLDWIRKLSDDGTLLLAGDSRLPDGSYNLIEMERLIHLGLLCTLHSPQYRPSMKWVVEAFSGGLMGNLPALPSFQSHPQYISLSSPTGGSTTRSTSSSITTATRSDTTTITVNCSDFASANGETIYMTAENGINNNYTNNSDRFLDRSKTIQMIETPREISFKEIISATNNFSDSQRVAELDFGTAYHGFLDSSHHVLVKRLGMKTCPALRERFSNELLNLGRLRHRNLIQLRGWCTEQGEMLVVYDYSADRLLSHLLFHHDKGALQWCHRYNIIKSLASAILYLHEEWDEQVIHRNITSSAVILDPDLNPRLSSFALAEFLTRNEHGNHHTGWRLQPPRTDETAEIRNHLHSFKPRFKTKNEADNGNDQCFSKEQRMESIEGWKQRNATSLSLVKRIQALGIQ 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1652524 1656723 - Cp4.1LG17g03230.1 Cpe17g00250 483568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00250 655 Gene3D Transferase(Phosphotransferase) domain 1 133 193 - -
Cpe17g00250 655 Gene3D Transferase(Phosphotransferase) domain 1 194 316 - -
Cpe17g00250 655 Gene3D Phosphorylase Kinase; domain 1 385 499 - -
Cpe17g00250 655 SUPERFAMILY Protein kinase-like (PK-like) 399 579 IPR011009 -
Cpe17g00250 655 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 27 192 - -
Cpe17g00250 655 Pfam Protein tyrosine and serine/threonine kinase 202 240 IPR001245 GO:0004672|GO:0006468
Cpe17g00250 655 Pfam Protein tyrosine and serine/threonine kinase 429 580 IPR001245 GO:0004672|GO:0006468
Cpe17g00250 655 PANTHER - 27 192 - -
Cpe17g00250 655 MobiDBLite consensus disorder prediction 334 353 - -
Cpe17g00250 655 PANTHER - 192 582 - -
Cpe17g00250 655 ProSiteProfiles Protein kinase domain profile. 423 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00250 655 ProSitePatterns Protein kinases ATP-binding region signature. 149 172 IPR017441 GO:0005524
Cpe17g00250 655 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 192 582 - -
Cpe17g00250 655 Gene3D Transferase(Phosphotransferase) domain 1 502 595 - -
Cpe17g00250 655 SUPERFAMILY Protein kinase-like (PK-like) 125 309 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00250 - - - cmos:111464327 738.028
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00092 Cpe17g00250 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00250 Cpe-Chr17:1652524 Cpe03g00101 Cpe-Chr3:521855 8.24E-07 dispersed
Cpe12g00092 Cpe-Chr12:548387 Cpe17g00250 Cpe-Chr17:1652524 1.47E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g896 . . . Bda08g00033 . . . . Cmo08g00998 Cmo17g00106 . . . . . . . . . . . . . . Cla06g00751 . . . . . . . . . . . . Chy05g00555 . . . . . . . . . . . . Cma08g01026 Cma17g00103 Car08g00903 Car17g00092 Cpe12g00092 Cpe17g00250 Bhi12g01503 . . . . . Lcy13g0459 . . . . . . . Lsi09g01148 . . Cme05g00712
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010661 1 1 0 0 0 1 2 0 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 2 0 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62935 PF07714 PK_Tyr_Ser-Thr 2.20E-16 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00250 Cpe_Chr17 FPKM 14.717557 14.036263 14.35416 15.91657 13.456359 14.326264 15.744401 18.912828 20.612116 28.400961