Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00251 ATGGTAGAAGAGGAAAGAACTGAAGCAGGCTGGGATAGCAAGAAGGAGTTGACCATGACATCGACTTCTTCTGCTGGGGGGAAGCAACTGGCCGTGGTTGAAGCTCCTTCTAACTGTGTTCCATACCCGCCACCGCAAACGACGTATGAGGATCTCATAGCCGATCCCAAGCTCTTTATGGCGTCCTTGGAAAAGCTCCATTCTATTATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTGGACCTGCATCGGCTTTTCGTGGAGGTCACTGCTCGTGGTGGCCTTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAAATTTCCTTCGACAGCCACCAATGCATCTTTTGTGCTGAGGAAGTATTATCTCTCATTAATTCATCATTTTGAACAGATTTACTTCTTTAAAGCCGTGGGATGGACACCAAAAGTTTCTGATTCCTCTCCAACCCCAAGTGCAGTGCCAATTCCGACACAAGGGACGATGACCTCTATGTTGCCGCCATCCAATCGGCCAGCACCCCAGCAGCAGCCGCAGACTACTGCAACCGAACTTCCAGCAGTTGCTCCGAGTTCGGTACCACCAGCGGGAGGGTTTCCGGTGGTTGGAGTCATTGATGGAAAATTTGAAAGCGGATATCTCGTTACTGTTACTGTAGGAAATGAGAAGCTAAAAGGTGTGCTTTATATGACTCCTCCAGAGCAACCTGCTCAACAAGTGTTCCAGCCTGGTAGTGTTTTCACCAAAGATGGTACTACCTCCACTACACCAAATGCTCAGCGCCGTCGCCGGAGGAAGAAATCCGAGATCAAACGAAGGGATCCAGCTCATCCAAAGCCGAATAGAAGTGGCTACAATTTCTTCTTCGCCGAGCAGCATGCTAGACTCAAACCATTACATCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGAGCTTTGGAATAAACTTAATGAGTCTGAAAAAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAATTGAGATGGAGAATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTCATGCAGTGCCATTACAGCAGCTTCTTCCTGGGACAGACCTGAATATGGTCTATGCTGCTGACAAAAACGAAGAAACCGAGGGTGGCGAACATCCTCATATGCCGTATAATGATACAATTTATGTTGAAGATAAGGAGGAGGAGGAAGAAGAGGAAGAGGACGAGGACGACGATGAGGAAGAAGGTGCAGCAGCACCTCAAGGAGTTGGCAATGTGGATGTTAACGTCTTGGCTGAGGAGGAACGCTGCGAGACTAGACCAGAACCAACAACAACAGCCATTATACAAGAGAGTAGCACGGTCAAGGACGATAAGGAAGTTTTCGCCGGGCATTCAGTGGTAATGGTGGATGTGGCAAATGAAGAACCAGAACCAGAACCAACAGCAACAGCCATTGTAGAAGATAAGGAAGTTTTCGCCAGGGATTCGATGGTAATGGTGGTGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTCGCCGGGGGTTCGATGGTAATGGTGGAGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTTGCCGGAGATTCGATGGTAATGGTGGAGGCGGAAAATGAAGAACCAGAACCAACAACAGCAGCCATTATAGAAGATAAGGAGGTTTTCGCGGGGGATTCGGTGGTAATGATGGAGGTGGCAAATGAAGAACCAGAACCAACAACCGCAGCCATTGTAGAAGATAAGGAGGTTTTCGCCGGGGATTCGGTGGTAATGATGGAGGCGACAAATGAAGGAACAGAAGCAACAAGAAGAGACATTATAGAAGATAAGGAAGTTTTTGTGGGGGATTCGTTGATAATGATGGAGGCAGCAAAGGAAGAAGCAGAGCCAACAACAACAGCCATTACAGAAGATTAA 2025 46.57 MVEEERTEAGWDSKKELTMTSTSSAGGKQLAVVEAPSNCVPYPPPQTTYEDLIADPKLFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTARGGLEKVIRERRWKEVTSVFKFPSTATNASFVLRKYYLSLIHHFEQIYFFKAVGWTPKVSDSSPTPSAVPIPTQGTMTSMLPPSNRPAPQQQPQTTATELPAVAPSSVPPAGGFPVVGVIDGKFESGYLVTVTVGNEKLKGVLYMTPPEQPAQQVFQPGSVFTKDGTTSTTPNAQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLNESEKTVYQEKAMKDKERYRIEMENYREKLRTGQIISHAVPLQQLLPGTDLNMVYAADKNEETEGGEHPHMPYNDTIYVEDKEEEEEEEEDEDDDEEEGAAAPQGVGNVDVNVLAEEERCETRPEPTTTAIIQESSTVKDDKEVFAGHSVVMVDVANEEPEPEPTATAIVEDKEVFARDSMVMVVAANEEPQPTATTIIEDKEVFAGGSMVMVEAANEEPQPTATTIIEDKEVFAGDSMVMVEAENEEPEPTTAAIIEDKEVFAGDSVVMMEVANEEPEPTTAAIVEDKEVFAGDSVVMMEATNEGTEATRRDIIEDKEVFVGDSLIMMEAAKEEAEPTTTAITED 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1660205 1665958 + Cp4.1LG17g03310.1 Cpe17g00251 483569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00251 674 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 6 422 - -
Cpe17g00251 674 MobiDBLite consensus disorder prediction 251 268 - -
Cpe17g00251 674 CDD ARID_HMGB9-like 55 140 IPR045303 GO:0003677
Cpe17g00251 674 SMART bright_3 54 145 IPR001606 GO:0003677
Cpe17g00251 674 MobiDBLite consensus disorder prediction 156 197 - -
Cpe17g00251 674 SUPERFAMILY ARID-like 49 153 IPR036431 GO:0003677
Cpe17g00251 674 SMART hmgende2 287 356 IPR009071 -
Cpe17g00251 674 Pfam ARID/BRIGHT DNA binding domain 57 140 IPR001606 GO:0003677
Cpe17g00251 674 MobiDBLite consensus disorder prediction 409 437 - -
Cpe17g00251 674 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 288 355 IPR009071 -
Cpe17g00251 674 SUPERFAMILY HMG-box 281 360 IPR036910 -
Cpe17g00251 674 MobiDBLite consensus disorder prediction 156 200 - -
Cpe17g00251 674 SMART ARID_2 50 140 - -
Cpe17g00251 674 Pfam HMG (high mobility group) box 288 355 IPR009071 -
Cpe17g00251 674 Gene3D High mobility group box domain 272 367 IPR036910 -
Cpe17g00251 674 Coils Coil 406 427 - -
Cpe17g00251 674 Coils Coil 337 357 - -
Cpe17g00251 674 MobiDBLite consensus disorder prediction 409 428 - -
Cpe17g00251 674 CDD HMGB-UBF_HMG-box 288 352 - -
Cpe17g00251 674 MobiDBLite consensus disorder prediction 251 294 - -
Cpe17g00251 674 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Cpe17g00251 674 Gene3D - 46 148 IPR036431 GO:0003677
Cpe17g00251 674 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 422 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00251 - - - cmax:111494342 1120.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00052 Cpe-Chr2:275504 Cpe17g00251 Cpe-Chr17:1660205 1.87E-91 dispersed
Cpe06g00043 Cpe-Chr6:227366 Cpe17g00251 Cpe-Chr17:1660205 7.96E-29 dispersed
Cpe08g01275 Cpe-Chr8:9220943 Cpe17g00251 Cpe-Chr17:1660205 5.90E-08 dispersed
Cpe03g00522 Cpe-Chr3:3073926 Cpe17g00251 Cpe-Chr17:1660205 5.59E-10 transposed
Cpe04g00073 Cpe-Chr4:708226 Cpe17g00251 Cpe-Chr17:1660205 1.12E-09 transposed
Cpe12g00084 Cpe-Chr12:507908 Cpe17g00251 Cpe-Chr17:1660205 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe17g00251 . 45 384 ARID Transcription Factor Family AT1G04880 60.3 4.8e-106 382.1
Cpe12g00084 . 1 373 ARID Transcription Factor Family AT1G04880 54.2 6.5e-103 371.7
Cpe02g00012 . 143 422 ARID Transcription Factor Family AT1G20910 67.5 2.0e-103 373.2
Cpe08g01275 . 207 478 ARID Transcription Factor Family AT1G20910 59.7 8.8e-88 321.2
Cpe14g01071 . 163 433 ARID Transcription Factor Family AT1G20910 50.9 7.0e-69 258.5
Cpe02g00052 CCT 16 312 ARID Transcription Factor Family AT1G76110 65.3 1.9e-110 396.4
Cpe06g00043 CCT 16 284 ARID Transcription Factor Family AT1G76110 59.4 1.4e-94 343.6
Cpe02g00012 . 52 452 ARID Transcription Factor Family AT1G76510 60.4 2.2e-127 453.0
Cpe08g01275 . 198 508 ARID Transcription Factor Family AT1G76510 61.7 2.5e-107 386.3
Cpe14g01071 . 154 463 ARID Transcription Factor Family AT1G76510 53.2 1.4e-86 317.4
Cpe02g01754 . 113 875 ARID Transcription Factor Family AT3G43240 59.8 3.7e-260 894.8
Cpe03g01028 . 1 781 ARID Transcription Factor Family AT3G43240 58.3 4.1e-259 891.3
Cpe12g00555 . 2 771 ARID Transcription Factor Family AT3G43240 57.1 7.9e-255 877.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50783 PF01388 ARID 1.10E-16 CL0123 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00251 Cpe_Chr17 FPKM 31.25926 35.843487 33.918453 33.279701 33.938564 34.926525 37.973305 25.70999 23.774212 23.429338