Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00251 ATGGTAGAAGAGGAAAGAACTGAAGCAGGCTGGGATAGCAAGAAGGAGTTGACCATGACATCGACTTCTTCTGCTGGGGGGAAGCAACTGGCCGTGGTTGAAGCTCCTTCTAACTGTGTTCCATACCCGCCACCGCAAACGACGTATGAGGATCTCATAGCCGATCCCAAGCTCTTTATGGCGTCCTTGGAAAAGCTCCATTCTATTATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTGGACCTGCATCGGCTTTTCGTGGAGGTCACTGCTCGTGGTGGCCTTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAAATTTCCTTCGACAGCCACCAATGCATCTTTTGTGCTGAGGAAGTATTATCTCTCATTAATTCATCATTTTGAACAGATTTACTTCTTTAAAGCCGTGGGATGGACACCAAAAGTTTCTGATTCCTCTCCAACCCCAAGTGCAGTGCCAATTCCGACACAAGGGACGATGACCTCTATGTTGCCGCCATCCAATCGGCCAGCACCCCAGCAGCAGCCGCAGACTACTGCAACCGAACTTCCAGCAGTTGCTCCGAGTTCGGTACCACCAGCGGGAGGGTTTCCGGTGGTTGGAGTCATTGATGGAAAATTTGAAAGCGGATATCTCGTTACTGTTACTGTAGGAAATGAGAAGCTAAAAGGTGTGCTTTATATGACTCCTCCAGAGCAACCTGCTCAACAAGTGTTCCAGCCTGGTAGTGTTTTCACCAAAGATGGTACTACCTCCACTACACCAAATGCTCAGCGCCGTCGCCGGAGGAAGAAATCCGAGATCAAACGAAGGGATCCAGCTCATCCAAAGCCGAATAGAAGTGGCTACAATTTCTTCTTCGCCGAGCAGCATGCTAGACTCAAACCATTACATCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGAGCTTTGGAATAAACTTAATGAGTCTGAAAAAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAATTGAGATGGAGAATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTCATGCAGTGCCATTACAGCAGCTTCTTCCTGGGACAGACCTGAATATGGTCTATGCTGCTGACAAAAACGAAGAAACCGAGGGTGGCGAACATCCTCATATGCCGTATAATGATACAATTTATGTTGAAGATAAGGAGGAGGAGGAAGAAGAGGAAGAGGACGAGGACGACGATGAGGAAGAAGGTGCAGCAGCACCTCAAGGAGTTGGCAATGTGGATGTTAACGTCTTGGCTGAGGAGGAACGCTGCGAGACTAGACCAGAACCAACAACAACAGCCATTATACAAGAGAGTAGCACGGTCAAGGACGATAAGGAAGTTTTCGCCGGGCATTCAGTGGTAATGGTGGATGTGGCAAATGAAGAACCAGAACCAGAACCAACAGCAACAGCCATTGTAGAAGATAAGGAAGTTTTCGCCAGGGATTCGATGGTAATGGTGGTGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTCGCCGGGGGTTCGATGGTAATGGTGGAGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTTGCCGGAGATTCGATGGTAATGGTGGAGGCGGAAAATGAAGAACCAGAACCAACAACAGCAGCCATTATAGAAGATAAGGAGGTTTTCGCGGGGGATTCGGTGGTAATGATGGAGGTGGCAAATGAAGAACCAGAACCAACAACCGCAGCCATTGTAGAAGATAAGGAGGTTTTCGCCGGGGATTCGGTGGTAATGATGGAGGCGACAAATGAAGGAACAGAAGCAACAAGAAGAGACATTATAGAAGATAAGGAAGTTTTTGTGGGGGATTCGTTGATAATGATGGAGGCAGCAAAGGAAGAAGCAGAGCCAACAACAACAGCCATTACAGAAGATTAA 2025 46.57 MVEEERTEAGWDSKKELTMTSTSSAGGKQLAVVEAPSNCVPYPPPQTTYEDLIADPKLFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTARGGLEKVIRERRWKEVTSVFKFPSTATNASFVLRKYYLSLIHHFEQIYFFKAVGWTPKVSDSSPTPSAVPIPTQGTMTSMLPPSNRPAPQQQPQTTATELPAVAPSSVPPAGGFPVVGVIDGKFESGYLVTVTVGNEKLKGVLYMTPPEQPAQQVFQPGSVFTKDGTTSTTPNAQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLNESEKTVYQEKAMKDKERYRIEMENYREKLRTGQIISHAVPLQQLLPGTDLNMVYAADKNEETEGGEHPHMPYNDTIYVEDKEEEEEEEEDEDDDEEEGAAAPQGVGNVDVNVLAEEERCETRPEPTTTAIIQESSTVKDDKEVFAGHSVVMVDVANEEPEPEPTATAIVEDKEVFARDSMVMVVAANEEPQPTATTIIEDKEVFAGGSMVMVEAANEEPQPTATTIIEDKEVFAGDSMVMVEAENEEPEPTTAAIIEDKEVFAGDSVVMMEVANEEPEPTTAAIVEDKEVFAGDSVVMMEATNEGTEATRRDIIEDKEVFVGDSLIMMEAAKEEAEPTTTAITED 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1660205 1665958 + Cp4.1LG17g03310.1 Cpe17g00251 483569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00251 674 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 6 422 - -
Cpe17g00251 674 MobiDBLite consensus disorder prediction 251 268 - -
Cpe17g00251 674 CDD ARID_HMGB9-like 55 140 IPR045303 GO:0003677
Cpe17g00251 674 SMART bright_3 54 145 IPR001606 GO:0003677
Cpe17g00251 674 MobiDBLite consensus disorder prediction 156 197 - -
Cpe17g00251 674 SUPERFAMILY ARID-like 49 153 IPR036431 GO:0003677
Cpe17g00251 674 SMART hmgende2 287 356 IPR009071 -
Cpe17g00251 674 Pfam ARID/BRIGHT DNA binding domain 57 140 IPR001606 GO:0003677
Cpe17g00251 674 MobiDBLite consensus disorder prediction 409 437 - -
Cpe17g00251 674 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 288 355 IPR009071 -
Cpe17g00251 674 SUPERFAMILY HMG-box 281 360 IPR036910 -
Cpe17g00251 674 MobiDBLite consensus disorder prediction 156 200 - -
Cpe17g00251 674 SMART ARID_2 50 140 - -
Cpe17g00251 674 Pfam HMG (high mobility group) box 288 355 IPR009071 -
Cpe17g00251 674 Gene3D High mobility group box domain 272 367 IPR036910 -
Cpe17g00251 674 Coils Coil 406 427 - -
Cpe17g00251 674 Coils Coil 337 357 - -
Cpe17g00251 674 MobiDBLite consensus disorder prediction 409 428 - -
Cpe17g00251 674 CDD HMGB-UBF_HMG-box 288 352 - -
Cpe17g00251 674 MobiDBLite consensus disorder prediction 251 294 - -
Cpe17g00251 674 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Cpe17g00251 674 Gene3D - 46 148 IPR036431 GO:0003677
Cpe17g00251 674 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 422 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00052 Cpe-Chr2:275504 Cpe17g00251 Cpe-Chr17:1660205 1.87E-91 dispersed
Cpe06g00043 Cpe-Chr6:227366 Cpe17g00251 Cpe-Chr17:1660205 7.96E-29 dispersed
Cpe08g01275 Cpe-Chr8:9220943 Cpe17g00251 Cpe-Chr17:1660205 5.90E-08 dispersed
Cpe03g00522 Cpe-Chr3:3073926 Cpe17g00251 Cpe-Chr17:1660205 5.59E-10 transposed
Cpe04g00073 Cpe-Chr4:708226 Cpe17g00251 Cpe-Chr17:1660205 1.12E-09 transposed
Cpe12g00084 Cpe-Chr12:507908 Cpe17g00251 Cpe-Chr17:1660205 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50783 PF01388 ARID 1.10E-16 CL0123 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00251 - - cmax:111494342 1120.15