Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00291 ATGGCTACTTTAAACTTAGGCTCCGCTTCTCACTTTGTTGATCAGCTTCAGCAACAACGCCCTGATCTCCACCTACAAACGCCGCCAAATTCCGACCATGTTACTAATCTCAACCACTACAACGGCGGTGGCTCTGGTGGCAGCAGTGGCGGTGATGTCATGGTTCGTAGACCTAGGGGTCGCCCGGCCGGGTCGAAGAACAAGCCGAAGCCGCCTGTAATCATCACGCGCGAGAGTGCTAATACACTTCGAGCTCATATCTTGGAGGTTGGTAGCGGCTGCGATGTGTTTGAGGCGATAGCCACTTATGCACGACGGCGACAACGGGGGATCTGCGTGTTGAGTGGAAGTGGGATCGTGAATAATGTTAGCTTGCGTCAACCGACGGCAACTGGGTCGGTGTTGACGCTTCAAGGGAGGTTTGAGATTTTATCGCTATCGGGATCGTTTCTTCCACCACCAGCTCCACCGGGTGCTACTAGTCTCACGATCTTTTTAGCTGGAGGACAAGGACAGGTCGTCGGAGGAAATGTCGTGGGAGCTTTGATGGCTTCGGGGCCGGTCATCATCATAGCGTCATCATTTAGTAACGTAGCGTATGAGAGGTTGCCATTGGAGGAAGAAGAGTTGCCGATGCAAGCAGGTGGTGAAGACGGGGACGGAGGAGACGGTGGTGACGATGGTCACAACAACCCTTTTCCCGACGCATCTTCGGGTTTGCCCTTTCTTAATCTTCCTATGAACATGCCCAATCAAAATCAATTTTTCGGTTGA 774 52.45 MATLNLGSASHFVDQLQQQRPDLHLQTPPNSDHVTNLNHYNGGGSGGSSGGDVMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEVGSGCDVFEAIATYARRRQRGICVLSGSGIVNNVSLRQPTATGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALMASGPVIIIASSFSNVAYERLPLEEEELPMQAGGEDGDGGDGGDDGHNNPFPDASSGLPFLNLPMNMPNQNQFFG 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1974212 1975142 + Cp4.1LG17g02800.1 Cpe17g00291 483609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00291 257 MobiDBLite consensus disorder prediction 23 73 - -
Cpe17g00291 257 ProSiteProfiles PPC domain profile profile. 80 216 IPR005175 -
Cpe17g00291 257 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 254 - -
Cpe17g00291 257 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 213 - -
Cpe17g00291 257 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 197 IPR005175 -
Cpe17g00291 257 MobiDBLite consensus disorder prediction 212 244 - -
Cpe17g00291 257 MobiDBLite consensus disorder prediction 23 45 - -
Cpe17g00291 257 PIRSF ESCAROLA 2 255 IPR014476 GO:0003680
Cpe17g00291 257 Gene3D - 83 214 - -
Cpe17g00291 257 CDD DUF296 84 167 IPR005175 -
Cpe17g00291 257 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 254 IPR014476 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00955 Cpe-Chr14:8063080 Cpe17g00291 Cpe-Chr17:1974212 1.32E-81 dispersed
Cpe15g00220 Cpe-Chr15:1903902 Cpe17g00291 Cpe-Chr17:1974212 4.04E-90 dispersed
Cpe17g00291 Cpe-Chr17:1974212 Cpe01g00169 Cpe-Chr1:954469 3.08E-67 dispersed
Cpe12g00049 Cpe-Chr12:266568 Cpe17g00291 Cpe-Chr17:1974212 4.16E-129 wgd
Cpe17g00291 Cpe-Chr17:1974212 Cpe03g01656 Cpe-Chr3:12655423 1.62E-107 wgd
Cpe17g00291 Cpe-Chr17:1974212 Cpe08g00456 Cpe-Chr8:2934971 3.95E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00291 - - csv:101203160 416.387