Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00305 ATGGCTGGCCTATCGCTTAAGTGCGGGGATTGTGGCGCTCTTTTGAGATCCGTAGAAGAAGCTCAAGAACACGCTGAACTCACTTCTCATTCCAACTTCTCTGAGTCCACTGAAGCTGTTCTCAATCTCATCTGCACTGCTTGCGGCAAGCCCTGCCGATCCAAGACGGAAAGTGATTTGCACACGAAAAGGACTGGCCACACTGAGTTTACTGATAAGACTTTGGAGGCTGCAAAACCAATAAGCTTGGAGGCCCCGAAGGTAGCTGCGGAGTCAGAAGATGGTGGGGATGCAAGTGCTAGCAAGTCTGAAGAAATGGTTGTGCCAGAGGTGAACAAGAGTATATTGGAGGAACTTGAATCTATGGGCTTCGCAACAGCACGAGCAACCCGTGCACTTTATTATTCTGGAAATGCAAGTCTGGAGGCTGCAGTCAATTGGGTAGTCGAACATGAGAATGATCCAGAGATAGATCAGATGCCTTTGGTTCCTAAGGATACAAAGGTCGAGGCTCCCAAGCCTGCTCTTACACCTGAGCAACTGAAAGCAAAACAGCAGGAGCTAAGGGAACGAGCTCGGAAGAAAAAAGAGGAGGAAGAGAAGCTAGCAGAGAGAGAAAGGGAAAAGGAGAGAATTCGAATTGGCAAGGAGCTCTTAGAAGCAAAAAGGATCGAGGAATTAAATGAGAGAAAAAGAATATTGGCCTTGAGGAAAGCTGAAAAAGAAGAAGAGAAAAGAGCCAGAGACAAAATTCGTCAAAAACTTGAAGAGGACAAGGCGGAAAGAAGACGGAGACTTGGGTTGCCAGCAGAAGATCCTTCCACTGCGAAACCTCCCGCCCCAGTTGTTGAAGAGAAAAAGCTCTCGTTGCCGGTTAGACCTGCTTCAAAAGCAGAGCAAATGAGGGAATGTTTGCGATCATTAAAGTCCAATCACAAGGAGGATGATGCTAAAGTGAAGAGGGCGTTTCAAACCCTTCTAACTTATGTGGGAAACGTGGTGAAAAATCCTGATGAAGAGAAGTTCAGAAAGATTAGACTCAGCAACCAAACTTTCCAGGATAGAGTGGGTGCACTGAGAGGAGGAATCGAGTTTCTAGAGCTGTGTGGGTTTGAGAAAATTGAAGGTGATGAGTTCTTGTTTCTGCCCAGAGACAAAGTTGACAGAGCAGTGCTTAATTCAGCTGGCTCTGAGCTCGACTCTGCAATTAAGAATCCCTTCTTTGGTGTTCTCTAA 1236 46.36 MAGLSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEAVLNLICTACGKPCRSKTESDLHTKRTGHTEFTDKTLEAAKPISLEAPKVAAESEDGGDASASKSEEMVVPEVNKSILEELESMGFATARATRALYYSGNASLEAAVNWVVEHENDPEIDQMPLVPKDTKVEAPKPALTPEQLKAKQQELRERARKKKEEEEKLAEREREKERIRIGKELLEAKRIEELNERKRILALRKAEKEEEKRARDKIRQKLEEDKAERRRRLGLPAEDPSTAKPPAPVVEEKKLSLPVRPASKAEQMRECLRSLKSNHKEDDAKVKRAFQTLLTYVGNVVKNPDEEKFRKIRLSNQTFQDRVGALRGGIEFLELCGFEKIEGDEFLFLPRDKVDRAVLNSAGSELDSAIKNPFFGVL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2068622 2076756 + Cp4.1LG17g02690.1 Cpe17g00305 483623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00305 411 SUPERFAMILY UBA-like 97 164 IPR009060 GO:0005515
Cpe17g00305 411 SMART uba_6 112 150 IPR015940 -
Cpe17g00305 411 SUPERFAMILY PUG domain-like 297 407 IPR036339 -
Cpe17g00305 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Cpe17g00305 411 Coils Coil 181 215 - -
Cpe17g00305 411 MobiDBLite consensus disorder prediction 183 207 - -
Cpe17g00305 411 MobiDBLite consensus disorder prediction 239 280 - -
Cpe17g00305 411 CDD PUB_UBA_plant 305 411 - -
Cpe17g00305 411 MobiDBLite consensus disorder prediction 54 74 - -
Cpe17g00305 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Cpe17g00305 411 SMART PGNneu 321 384 - -
Cpe17g00305 411 Gene3D - 303 401 - -
Cpe17g00305 411 MobiDBLite consensus disorder prediction 171 207 - -
Cpe17g00305 411 MobiDBLite consensus disorder prediction 239 270 - -
Cpe17g00305 411 Pfam UBA/TS-N domain 112 147 IPR015940 -
Cpe17g00305 411 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Cpe17g00305 411 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Cpe17g00305 411 Coils Coil 224 261 - -
Cpe17g00305 411 CDD UBA_PUB_plant 110 158 - -
Cpe17g00305 411 Pfam PUB domain 318 389 IPR018997 -
Cpe17g00305 411 MobiDBLite consensus disorder prediction 54 105 - -
Cpe17g00305 411 Gene3D - 113 157 - -
Cpe17g00305 411 PANTHER F13M7.16 PROTEIN 1 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00838 Cpe-Chr7:7602638 Cpe17g00305 Cpe-Chr17:2068622 2.54E-89 dispersed
Cpe13g00353 Cpe-Chr13:3569584 Cpe17g00305 Cpe-Chr17:2068622 5.57E-07 dispersed
Cpe17g00305 Cpe-Chr17:2068622 Cpe02g00728 Cpe-Chr2:4636696 9.61E-06 dispersed
Cpe17g00305 Cpe-Chr17:2068622 Cpe11g00595 Cpe-Chr11:3562436 1.08E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00305 K24348 - csv:101215434 699.893