Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe17g00308 | ATGGATGGACCAACTGGTCGTGGCGGCGGCATGGATATGAATTTACCGAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCAGAGCATGCTTTAACTGGTCATAAAGTTGCTATTAAGATACTTAACCGCCGGAAGATAAAAAACTTGGACATGGAAGAAAAAGTAAGGAGAGAGATTAAAATATTGAGATTGTTCATGCATCCTCACATTATACGGCTCTATGAAGTTATAGAGACCCCGACAGACATTTATGTTGTGATGGAGTACGTAAAATCTGGAGAGCTCTTTGATTATATTGTAGAAAAGGGAAGGTTGCAGGAAGATGAAGCCCGTATTTTTTTCCAACAGATAATTTCTGGTGTGGAGTACTGCCACAGGAATATGGTGGTGCACAGAGATCTTAAGCCTGAGAATTTGCTTTTGGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCTCCAGAGGTAATCTCCGGGAAATTATATGCTGGACCTGAAGTAGATGTATGGAGTTGTGGTGTTATTTTGTATGCGCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGGATCTATACTCTTCCAAGTCATTTATCGTCAGGTGCTAGAGAACTGATTCCTAGTATGCTGGTCGTTGACCCAATGAAGCGCATCACCATCCCTGAGATCCGACAGCACCCGTGGTTTCAGGCTCATCTTCCACGCTATTTAGCTGTGCCTCCACCCGATACAATGCAACAAGCCAAAAAGATTGATGAAGACATTCTTCAGGAGGTTGTAAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTCGTAACCGAATTCAAAATGAGGCTACAGTTGCTTATTATTTGTTGCTGGACAACCGCTTCCGTGTTTCTAGTGGTTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGATTCAACCGTATGCACCCTGGTGAACCTACAAGTCCTGTTGTAGGACACCGTCATCCTGGATATATGGATTACCAAGGAATGGGATTAAGATCACAGTTTCCTGTTGAGAGAAAGTGGGCTCTGGGATTACAGTCTCGCGCTCATCCACGTGAAATTATGACCGAGGTTCTTAAAGCTCTACGTGAGCTCAATGTGGCTTGGAAGAAGATTGGGCACTACAATATGAAATGTAGGTGGTTACCTGGAATTCCAGGCCATCATGAAGGCATGATCAACAGCCCTGTGCATAGTAATCATTACTTCGGGGACGAATCTACCATCATTGAAAACGATGGCGTCGTTAAATTGCCTAATGTTATCAAGTTTGAAGTTCAGCTCTACAAAACGCGGGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCGTTCCTTGCACAGCTCCGAGTGCTCTAA | 1545 | 43.37 | MDGPTGRGGGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARIFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNRMHPGEPTSPVVGHRHPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINSPVHSNHYFGDESTIIENDGVVKLPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL | 514 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 2085688 | 2093924 | + | Cp4.1LG17g02720.1 | Cpe17g00308 | 483626 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe17g00308 | 514 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 291 | 331 | IPR015940 | - | |
Cpe17g00308 | 514 | SUPERFAMILY | KA1-like | 327 | 513 | IPR028375 | - | |
Cpe17g00308 | 514 | Gene3D | Transferase(Phosphotransferase) domain 1 | 11 | 348 | - | - | |
Cpe17g00308 | 514 | Pfam | Kinase associated domain 1 | 471 | 513 | IPR001772 | - | |
Cpe17g00308 | 514 | ProSiteProfiles | Kinase associated domain 1 (KA1) profile. | 465 | 513 | IPR001772 | - | |
Cpe17g00308 | 514 | PANTHER | SERINE/THREONINE KINASE | 8 | 513 | - | - | |
Cpe17g00308 | 514 | Gene3D | Kinase associated domain 1, KA1 | 394 | 512 | - | - | |
Cpe17g00308 | 514 | CDD | STKc_AMPK_alpha | 15 | 270 | - | - | |
Cpe17g00308 | 514 | CDD | UBA_SnRK1_plant | 292 | 332 | - | - | |
Cpe17g00308 | 514 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 8 | 513 | - | - | |
Cpe17g00308 | 514 | SUPERFAMILY | Protein kinase-like (PK-like) | 15 | 288 | IPR011009 | - | |
Cpe17g00308 | 514 | Pfam | UBA/TS-N domain | 292 | 328 | IPR015940 | - | |
Cpe17g00308 | 514 | CDD | AMPKA_C | 388 | 511 | - | - | |
Cpe17g00308 | 514 | SUPERFAMILY | UBA-like | 280 | 329 | IPR009060 | GO:0005515 | |
Cpe17g00308 | 514 | SMART | uba_6 | 293 | 330 | IPR015940 | - | |
Cpe17g00308 | 514 | ProSiteProfiles | Protein kinase domain profile. | 18 | 270 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe17g00308 | 514 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 137 | 149 | IPR008271 | GO:0004672|GO:0006468 | |
Cpe17g00308 | 514 | SMART | serkin_6 | 18 | 270 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe17g00308 | 514 | Pfam | Protein kinase domain | 18 | 270 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe17g00308 | 514 | ProSitePatterns | Protein kinases ATP-binding region signature. | 24 | 47 | IPR017441 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe05g00825 | Cpe-Chr5:5111636 | Cpe17g00308 | Cpe-Chr17:2085688 | 4.40E-43 | dispersed | |
Cpe16g00541 | Cpe-Chr16:6284396 | Cpe17g00308 | Cpe-Chr17:2085688 | 3.42E-43 | dispersed | |
Cpe17g00308 | Cpe-Chr17:2085688 | Cpe10g00071 | Cpe-Chr10:526181 | 4.99E-86 | dispersed | |
Cpe04g00045 | Cpe-Chr4:441461 | Cpe17g00308 | Cpe-Chr17:2085688 | 0 | transposed | |
Cpe12g00033 | Cpe-Chr12:164634 | Cpe17g00308 | Cpe-Chr17:2085688 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62936 | PF00069 | Pkinase | 1.20E-79 | CL0016 | Cpe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe17g00308 | K07198 | - | csv:101211720 | 1000.73 |