Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00308 ATGGATGGACCAACTGGTCGTGGCGGCGGCATGGATATGAATTTACCGAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCAGAGCATGCTTTAACTGGTCATAAAGTTGCTATTAAGATACTTAACCGCCGGAAGATAAAAAACTTGGACATGGAAGAAAAAGTAAGGAGAGAGATTAAAATATTGAGATTGTTCATGCATCCTCACATTATACGGCTCTATGAAGTTATAGAGACCCCGACAGACATTTATGTTGTGATGGAGTACGTAAAATCTGGAGAGCTCTTTGATTATATTGTAGAAAAGGGAAGGTTGCAGGAAGATGAAGCCCGTATTTTTTTCCAACAGATAATTTCTGGTGTGGAGTACTGCCACAGGAATATGGTGGTGCACAGAGATCTTAAGCCTGAGAATTTGCTTTTGGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCTCCAGAGGTAATCTCCGGGAAATTATATGCTGGACCTGAAGTAGATGTATGGAGTTGTGGTGTTATTTTGTATGCGCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGGATCTATACTCTTCCAAGTCATTTATCGTCAGGTGCTAGAGAACTGATTCCTAGTATGCTGGTCGTTGACCCAATGAAGCGCATCACCATCCCTGAGATCCGACAGCACCCGTGGTTTCAGGCTCATCTTCCACGCTATTTAGCTGTGCCTCCACCCGATACAATGCAACAAGCCAAAAAGATTGATGAAGACATTCTTCAGGAGGTTGTAAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTCGTAACCGAATTCAAAATGAGGCTACAGTTGCTTATTATTTGTTGCTGGACAACCGCTTCCGTGTTTCTAGTGGTTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGATTCAACCGTATGCACCCTGGTGAACCTACAAGTCCTGTTGTAGGACACCGTCATCCTGGATATATGGATTACCAAGGAATGGGATTAAGATCACAGTTTCCTGTTGAGAGAAAGTGGGCTCTGGGATTACAGTCTCGCGCTCATCCACGTGAAATTATGACCGAGGTTCTTAAAGCTCTACGTGAGCTCAATGTGGCTTGGAAGAAGATTGGGCACTACAATATGAAATGTAGGTGGTTACCTGGAATTCCAGGCCATCATGAAGGCATGATCAACAGCCCTGTGCATAGTAATCATTACTTCGGGGACGAATCTACCATCATTGAAAACGATGGCGTCGTTAAATTGCCTAATGTTATCAAGTTTGAAGTTCAGCTCTACAAAACGCGGGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCGTTCCTTGCACAGCTCCGAGTGCTCTAA 1545 43.37 MDGPTGRGGGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARIFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNRMHPGEPTSPVVGHRHPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINSPVHSNHYFGDESTIIENDGVVKLPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2085688 2093924 + Cp4.1LG17g02720.1 Cpe17g00308 483626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00308 514 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 291 331 IPR015940 -
Cpe17g00308 514 SUPERFAMILY KA1-like 327 513 IPR028375 -
Cpe17g00308 514 Gene3D Transferase(Phosphotransferase) domain 1 11 348 - -
Cpe17g00308 514 Pfam Kinase associated domain 1 471 513 IPR001772 -
Cpe17g00308 514 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 465 513 IPR001772 -
Cpe17g00308 514 PANTHER SERINE/THREONINE KINASE 8 513 - -
Cpe17g00308 514 Gene3D Kinase associated domain 1, KA1 394 512 - -
Cpe17g00308 514 CDD STKc_AMPK_alpha 15 270 - -
Cpe17g00308 514 CDD UBA_SnRK1_plant 292 332 - -
Cpe17g00308 514 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 513 - -
Cpe17g00308 514 SUPERFAMILY Protein kinase-like (PK-like) 15 288 IPR011009 -
Cpe17g00308 514 Pfam UBA/TS-N domain 292 328 IPR015940 -
Cpe17g00308 514 CDD AMPKA_C 388 511 - -
Cpe17g00308 514 SUPERFAMILY UBA-like 280 329 IPR009060 GO:0005515
Cpe17g00308 514 SMART uba_6 293 330 IPR015940 -
Cpe17g00308 514 ProSiteProfiles Protein kinase domain profile. 18 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00308 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Cpe17g00308 514 SMART serkin_6 18 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00308 514 Pfam Protein kinase domain 18 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00308 514 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00825 Cpe-Chr5:5111636 Cpe17g00308 Cpe-Chr17:2085688 4.40E-43 dispersed
Cpe16g00541 Cpe-Chr16:6284396 Cpe17g00308 Cpe-Chr17:2085688 3.42E-43 dispersed
Cpe17g00308 Cpe-Chr17:2085688 Cpe10g00071 Cpe-Chr10:526181 4.99E-86 dispersed
Cpe04g00045 Cpe-Chr4:441461 Cpe17g00308 Cpe-Chr17:2085688 0 transposed
Cpe12g00033 Cpe-Chr12:164634 Cpe17g00308 Cpe-Chr17:2085688 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62936 PF00069 Pkinase 1.20E-79 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00308 K07198 - csv:101211720 1000.73