Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe17g00315 | ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAAGTGGCGGCGGAGGAGGAGGAGTAGGTCTGGGGAGTGGGAGTGGGAGTGGCGGCGGGGGAGGGCCATGTGGGGCCTGCAAGTTTCTTCGAAGAAAGTGCGTTCCAGGGTGCATATTCGCCCCATATTTCGACTCGGAACAAGGCGCCGCCCATTTCGCTGCTGTCCACAAGGTGTTCGGAGCCAGCAATGTGTCGAAGCTCCTCCTCCATATCCCTCTCCATAAGCGCCCCGACGCCGTGGTCACAATTTGCTACGAGGCCCAGGCTCGCCTCCGAGACCCTGTCTATGGCTGTGTCTCTCACATCTTTGCCCTTCAACAACAGGTGGTGAGTTTGCAAGCCGAGCTGTCGTACCTCCAAGCCCAACTAGCATCACTGGAACTGCCGTCGCCACCAAACCCGCCACCTCCACCTCCACCACCAAGTTTCCAAGGGCTACCGCCGCTTTCCATCTCAGACCTGCCATCCCCCCCCTCCCTGCCAGCCACTTACGACCTGTCGTCCCTCTTTGACCCAATGGCTCAGCCTGCCTGGGTCTTGCCACAGCAGCGCCTCGACCCTCGCCAGTTTACCGGGGGTGGAGGAGGCGGCGGCGGCGGTAGCAGCGGCTTGTCCACTGTGGCCGGAGAAGGCGATCTTCAAGCCTTGGCCCGTGAACTCCTGCACCGACACGGCGCTCCACCAAGCTCCGACTCCTCATCGCCGCCGTCCGTCTCTAAATAA | 756 | 61.77 | MSANPSTSGGGSGGGGGGVGLGSGSGSGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPLHKRPDAVVTICYEAQARLRDPVYGCVSHIFALQQQVVSLQAELSYLQAQLASLELPSPPNPPPPPPPPSFQGLPPLSISDLPSPPSLPATYDLSSLFDPMAQPAWVLPQQRLDPRQFTGGGGGGGGGSSGLSTVAGEGDLQALARELLHRHGAPPSSDSSSPPSVSK | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 2137602 | 2139662 | + | Cp4.1LG17g02570.1 | Cpe17g00315 | 483633 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe17g00315 | 251 | Pfam | Lateral organ boundaries (LOB) domain | 33 | 131 | IPR004883 | - | |
Cpe17g00315 | 251 | MobiDBLite | consensus disorder prediction | 191 | 224 | - | - | |
Cpe17g00315 | 251 | MobiDBLite | consensus disorder prediction | 232 | 251 | - | - | |
Cpe17g00315 | 251 | ProSiteProfiles | LOB domain profile. | 32 | 134 | IPR004883 | - | |
Cpe17g00315 | 251 | MobiDBLite | consensus disorder prediction | 139 | 166 | - | - | |
Cpe17g00315 | 251 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 6 | 237 | - | - | |
Cpe17g00315 | 251 | MobiDBLite | consensus disorder prediction | 138 | 168 | - | - | |
Cpe17g00315 | 251 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 18 | 6 | 237 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00170 | Cpe-Chr1:957353 | Cpe17g00315 | Cpe-Chr17:2137602 | 9.37E-48 | dispersed | |
Cpe01g01080 | Cpe-Chr1:6370029 | Cpe17g00315 | Cpe-Chr17:2137602 | 3.96E-44 | dispersed | |
Cpe03g01684 | Cpe-Chr3:12825261 | Cpe17g00315 | Cpe-Chr17:2137602 | 9.88E-61 | dispersed | |
Cpe12g00025 | Cpe-Chr12:125341 | Cpe17g00315 | Cpe-Chr17:2137602 | 5.39E-60 | dispersed | |
Cpe15g00070 | Cpe-Chr15:502522 | Cpe17g00315 | Cpe-Chr17:2137602 | 1.37E-52 | dispersed | |
Cpe08g00686 | Cpe-Chr8:5231278 | Cpe17g00315 | Cpe-Chr17:2137602 | 2.34E-55 | transposed | |
Cpe17g00911 | Cpe-Chr17:7050123 | Cpe17g00315 | Cpe-Chr17:2137602 | 2.80E-24 | transposed | |
Cpe12g00024 | Cpe-Chr12:118526 | Cpe17g00315 | Cpe-Chr17:2137602 | 1.21E-105 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50786 | PF03195 | LOB | 1.30E-38 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe17g00315 | K21994 | - | csv:101220603 | 317.39 |