Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00315 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAAGTGGCGGCGGAGGAGGAGGAGTAGGTCTGGGGAGTGGGAGTGGGAGTGGCGGCGGGGGAGGGCCATGTGGGGCCTGCAAGTTTCTTCGAAGAAAGTGCGTTCCAGGGTGCATATTCGCCCCATATTTCGACTCGGAACAAGGCGCCGCCCATTTCGCTGCTGTCCACAAGGTGTTCGGAGCCAGCAATGTGTCGAAGCTCCTCCTCCATATCCCTCTCCATAAGCGCCCCGACGCCGTGGTCACAATTTGCTACGAGGCCCAGGCTCGCCTCCGAGACCCTGTCTATGGCTGTGTCTCTCACATCTTTGCCCTTCAACAACAGGTGGTGAGTTTGCAAGCCGAGCTGTCGTACCTCCAAGCCCAACTAGCATCACTGGAACTGCCGTCGCCACCAAACCCGCCACCTCCACCTCCACCACCAAGTTTCCAAGGGCTACCGCCGCTTTCCATCTCAGACCTGCCATCCCCCCCCTCCCTGCCAGCCACTTACGACCTGTCGTCCCTCTTTGACCCAATGGCTCAGCCTGCCTGGGTCTTGCCACAGCAGCGCCTCGACCCTCGCCAGTTTACCGGGGGTGGAGGAGGCGGCGGCGGCGGTAGCAGCGGCTTGTCCACTGTGGCCGGAGAAGGCGATCTTCAAGCCTTGGCCCGTGAACTCCTGCACCGACACGGCGCTCCACCAAGCTCCGACTCCTCATCGCCGCCGTCCGTCTCTAAATAA 756 61.77 MSANPSTSGGGSGGGGGGVGLGSGSGSGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPLHKRPDAVVTICYEAQARLRDPVYGCVSHIFALQQQVVSLQAELSYLQAQLASLELPSPPNPPPPPPPPSFQGLPPLSISDLPSPPSLPATYDLSSLFDPMAQPAWVLPQQRLDPRQFTGGGGGGGGGSSGLSTVAGEGDLQALARELLHRHGAPPSSDSSSPPSVSK 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2137602 2139662 + Cp4.1LG17g02570.1 Cpe17g00315 483633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00315 251 Pfam Lateral organ boundaries (LOB) domain 33 131 IPR004883 -
Cpe17g00315 251 MobiDBLite consensus disorder prediction 191 224 - -
Cpe17g00315 251 MobiDBLite consensus disorder prediction 232 251 - -
Cpe17g00315 251 ProSiteProfiles LOB domain profile. 32 134 IPR004883 -
Cpe17g00315 251 MobiDBLite consensus disorder prediction 139 166 - -
Cpe17g00315 251 PANTHER LOB DOMAIN CONTAINING PROTEIN 6 237 - -
Cpe17g00315 251 MobiDBLite consensus disorder prediction 138 168 - -
Cpe17g00315 251 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 6 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00170 Cpe-Chr1:957353 Cpe17g00315 Cpe-Chr17:2137602 9.37E-48 dispersed
Cpe01g01080 Cpe-Chr1:6370029 Cpe17g00315 Cpe-Chr17:2137602 3.96E-44 dispersed
Cpe03g01684 Cpe-Chr3:12825261 Cpe17g00315 Cpe-Chr17:2137602 9.88E-61 dispersed
Cpe12g00025 Cpe-Chr12:125341 Cpe17g00315 Cpe-Chr17:2137602 5.39E-60 dispersed
Cpe15g00070 Cpe-Chr15:502522 Cpe17g00315 Cpe-Chr17:2137602 1.37E-52 dispersed
Cpe08g00686 Cpe-Chr8:5231278 Cpe17g00315 Cpe-Chr17:2137602 2.34E-55 transposed
Cpe17g00911 Cpe-Chr17:7050123 Cpe17g00315 Cpe-Chr17:2137602 2.80E-24 transposed
Cpe12g00024 Cpe-Chr12:118526 Cpe17g00315 Cpe-Chr17:2137602 1.21E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50786 PF03195 LOB 1.30E-38 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00315 K21994 - csv:101220603 317.39