Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00317 ATGGATGGAATTTCACCCCACAATCGCCCTCTTCCTCCTCTTTTTCTCTCCAAAGATCTCCACCTCCACCATGGGTTATTTCACCACCACCAAAACTCCGACGATGACGCCGCCGCTGGATCTAGTGGTTCTAAGAGAGATCGGGAGGAGGAAAACCCAATCACGGCTGTGGCAACGGCGGCGGACAGTAAGGAATTGTCTAATTCCTCTTCTCGACGGCCACGTGGCCGACCAGCTGGCTCCAAAAACAAGCCGAAGCCGCCTATTATTATCACTAGAGACAGCGCCAACGCTCTCAGATCCCATCTCATTGAAATCGCCTCCGGCTCCGACATCGTCGACGCTCTCACCACCTTTGCGCGGCGGCGTCAACGCGGCGTTTGTATTTTAAGCGCTACCGGAACTGTCACCAACGTCAATCTCCGGCAGCCGGCTTCTCCTGGCGCTGTCATCAATTTACATGGCAGATTTGAAATTCTCTCCCTCTCTGGCTCCTTCCTCCCACCGCCGGCTCCCCCGGCCGCCTCCGGGCTGACCGTTTACTTAGCTGGCGGGCAGGGGCAGGTGGTGGGTGGGAACGTAATCGGCCCATTTTTGTCCTCCGGTCCGGTGATTATTATGGCGGCTTCTTTTGGTAATGCGGCGTATGAACGACTCCCGATTGATGACGACGACGAAACTTCTCCGGCGGCGGAGATGACTGGACAACCGGCGGTGACCCCACCGCCGCCGCAATTGTTGGGGGATCCTAATGGGGGATTGTTTCATGGGGTGGCGCAGAATGTTGTGAATTCTTCATGCCAATTGCCGACGGAGGCGGCGGCGGCGGCGGCGGCGCTTTGGAGAGGAGGTCGGCCACCGTATTGA 867 57.55 MDGISPHNRPLPPLFLSKDLHLHHGLFHHHQNSDDDAAAGSSGSKRDREEENPITAVATAADSKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEIASGSDIVDALTTFARRRQRGVCILSATGTVTNVNLRQPASPGAVINLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPFLSSGPVIIMAASFGNAAYERLPIDDDDETSPAAEMTGQPAVTPPPPQLLGDPNGGLFHGVAQNVVNSSCQLPTEAAAAAAALWRGGRPPY 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2159794 2160660 + Cp4.1LG17g02510.1 Cpe17g00317 483635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00317 288 ProSiteProfiles PPC domain profile profile. 96 236 IPR005175 -
Cpe17g00317 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 288 IPR014476 GO:0003680
Cpe17g00317 288 MobiDBLite consensus disorder prediction 29 53 - -
Cpe17g00317 288 CDD DUF296 100 211 IPR005175 -
Cpe17g00317 288 MobiDBLite consensus disorder prediction 29 90 - -
Cpe17g00317 288 Gene3D - 99 229 - -
Cpe17g00317 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 7 288 - -
Cpe17g00317 288 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cpe17g00317 288 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 212 IPR005175 -
Cpe17g00317 288 MobiDBLite consensus disorder prediction 61 76 - -
Cpe17g00317 288 MobiDBLite consensus disorder prediction 221 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00199 Cpe-Chr13:1532186 Cpe17g00317 Cpe-Chr17:2159794 2.73E-82 dispersed
Cpe17g00317 Cpe-Chr17:2159794 Cpe08g00854 Cpe-Chr8:6759896 3.33E-68 dispersed
Cpe12g00023 Cpe-Chr12:113824 Cpe17g00317 Cpe-Chr17:2159794 5.76E-134 wgd
Cpe17g00317 Cpe-Chr17:2159794 Cpe03g01656 Cpe-Chr3:12655423 2.06E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00317 - - csv:101220133 412.149