Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00324 ATGGTGAGAGGGAAGACCCAGATGAGGTTAATTGAAAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAAAAAGCCTTTGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGGTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCAAACTCAAGCATGCAGGCAACTCTAGAGCGGTACAGAAAGCATGCCAAAACCAAAGAAGCCCTCGACCCTCCATCGGTTAATGATATCCAGTTGGAGCATCTGAATCATGAAGAAGCAGCCACCCTGATGAAGAAAATAGAGCAGCTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGTTCTTGCTCCATTGATGAACTTCAGCAGGTTGAACTTCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGGTTGAAGTGTTTGAAGAACAGATTAAACAACTAAAGCACAAGGAGAAACTCTTGGAAGCTGAAAATGCTAAGCTACTCGAAAAGTGGGAAAGTGAGGCAGAAGGGGGAGTAAAGGAAGTAGAAAGAGGGGAGAATTTAACGAACTATGCAGAAAGTAGCAGTCCAAGTTCAGAGGTAGAAACAGAGTTGTTCATTGGGCCACCTGAAACAAGGCCAAGAACATTTCTTTCCCTTAACTGA 675 43.26 MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANSSMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLGSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEGGVKEVERGENLTNYAESSSPSSEVETELFIGPPETRPRTFLSLN 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2200090 2206251 + Cp4.1LG17g02550.1 Cpe17g00324 483642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00324 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe17g00324 224 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cpe17g00324 224 SUPERFAMILY SRF-like 3 89 IPR036879 GO:0003677|GO:0046983
Cpe17g00324 224 MobiDBLite consensus disorder prediction 179 224 - -
Cpe17g00324 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe17g00324 224 Coils Coil 146 173 - -
Cpe17g00324 224 MobiDBLite consensus disorder prediction 191 205 - -
Cpe17g00324 224 Pfam K-box region 94 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe17g00324 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe17g00324 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe17g00324 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe17g00324 224 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Cpe17g00324 224 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe17g00324 224 PANTHER MADS-BOX PROTEIN SOC1 1 214 - -
Cpe17g00324 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Cpe17g00324 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cpe17g00324 224 PANTHER MADS BOX PROTEIN 1 214 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00501 Cpe17g00324 CCT
Cpe08g00501 Cpe17g00324 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00296 Cpe-Chr5:1658238 Cpe17g00324 Cpe-Chr17:2200090 1.06E-66 dispersed
Cpe08g00501 Cpe-Chr8:3241950 Cpe17g00324 Cpe-Chr17:2200090 1.32E-63 dispersed
Cpe13g00187 Cpe-Chr13:1468337 Cpe17g00324 Cpe-Chr17:2200090 4.29E-71 dispersed
Cpe17g00324 Cpe-Chr17:2200090 Cpe19g01096 Cpe-Chr19:7418452 3.07E-46 dispersed
Cpe20g00302 Cpe-Chr20:1691147 Cpe17g00324 Cpe-Chr17:2200090 1.94E-34 dispersed
Cpe17g00324 Cpe-Chr17:2200090 Cpe03g01699 Cpe-Chr3:12926741 1.63E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50787 PF01486 K-box 8.10E-24 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00324 - - bhj:120069607 331.643