Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe17g00324 | ATGGTGAGAGGGAAGACCCAGATGAGGTTAATTGAAAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAAAAAGCCTTTGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGGTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCAAACTCAAGCATGCAGGCAACTCTAGAGCGGTACAGAAAGCATGCCAAAACCAAAGAAGCCCTCGACCCTCCATCGGTTAATGATATCCAGTTGGAGCATCTGAATCATGAAGAAGCAGCCACCCTGATGAAGAAAATAGAGCAGCTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGTTCTTGCTCCATTGATGAACTTCAGCAGGTTGAACTTCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGGTTGAAGTGTTTGAAGAACAGATTAAACAACTAAAGCACAAGGAGAAACTCTTGGAAGCTGAAAATGCTAAGCTACTCGAAAAGTGGGAAAGTGAGGCAGAAGGGGGAGTAAAGGAAGTAGAAAGAGGGGAGAATTTAACGAACTATGCAGAAAGTAGCAGTCCAAGTTCAGAGGTAGAAACAGAGTTGTTCATTGGGCCACCTGAAACAAGGCCAAGAACATTTCTTTCCCTTAACTGA | 675 | 43.26 | MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANSSMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLGSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEGGVKEVERGENLTNYAESSSPSSEVETELFIGPPETRPRTFLSLN | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 2200090 | 2206251 | + | Cp4.1LG17g02550.1 | Cpe17g00324 | 483642 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe17g00324 | 224 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe17g00324 | 224 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Cpe17g00324 | 224 | SUPERFAMILY | SRF-like | 3 | 89 | IPR036879 | GO:0003677|GO:0046983 | |
Cpe17g00324 | 224 | MobiDBLite | consensus disorder prediction | 179 | 224 | - | - | |
Cpe17g00324 | 224 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe17g00324 | 224 | Coils | Coil | 146 | 173 | - | - | |
Cpe17g00324 | 224 | MobiDBLite | consensus disorder prediction | 191 | 205 | - | - | |
Cpe17g00324 | 224 | Pfam | K-box region | 94 | 174 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cpe17g00324 | 224 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe17g00324 | 224 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe17g00324 | 224 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe17g00324 | 224 | CDD | MADS_MEF2_like | 3 | 72 | IPR033896 | GO:0000977|GO:0045944 | |
Cpe17g00324 | 224 | ProSiteProfiles | K-box domain profile. | 90 | 180 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cpe17g00324 | 224 | PANTHER | MADS-BOX PROTEIN SOC1 | 1 | 214 | - | - | |
Cpe17g00324 | 224 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe17g00324 | 224 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe17g00324 | 224 | PANTHER | MADS BOX PROTEIN | 1 | 214 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe08g00501 | Cpe17g00324 | CCT | |
Cpe08g00501 | Cpe17g00324 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe05g00296 | Cpe-Chr5:1658238 | Cpe17g00324 | Cpe-Chr17:2200090 | 1.06E-66 | dispersed | |
Cpe08g00501 | Cpe-Chr8:3241950 | Cpe17g00324 | Cpe-Chr17:2200090 | 1.32E-63 | dispersed | |
Cpe13g00187 | Cpe-Chr13:1468337 | Cpe17g00324 | Cpe-Chr17:2200090 | 4.29E-71 | dispersed | |
Cpe17g00324 | Cpe-Chr17:2200090 | Cpe19g01096 | Cpe-Chr19:7418452 | 3.07E-46 | dispersed | |
Cpe20g00302 | Cpe-Chr20:1691147 | Cpe17g00324 | Cpe-Chr17:2200090 | 1.94E-34 | dispersed | |
Cpe17g00324 | Cpe-Chr17:2200090 | Cpe03g01699 | Cpe-Chr3:12926741 | 1.63E-73 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50787 | PF01486 | K-box | 8.10E-24 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe17g00324 | - | - | bhj:120069607 | 331.643 |