Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe17g00325 | ATGGGGAGAGGAAGAGTTGAACTGAAGCGAATAGAGAACAAAATCAACCGCCAAGTCACTTTCTCCAAGCGCCGTAATGGTCTACTCAAAAAAGCTTATGAACTCTCTGTTCTTTGCGATGCTGAGGTCGCTCTCATCATCTTCTCCAGCCGCGGCAAGCTCTATGAATTCGGCAGCGCCGGTACGACCAAGACACTGGAGCGATACCAACGTTGTTGCTTCTCTCCTCAAGACAATTACAGCGAACGAGAATCCCAGAACTGGTTCGTGGAAATCTCGAAACTGAAAGCTAAATATGAATCGCTATGTCGCACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTTAAGGAGCTCCAAAATCTTGAAAAGCAACTTGAAGCAGCTCTTGCTCAAGCTAGACAAAGGAAGTACGACCAAGACACTGGAGCGATACCAACGTTGTTGCTTCTCTCCTCAAGACAATTACAGCGAACGAGAATCCCAGTTGAAGTATGTTTGGGTGAGTTTGTGGAGAATGTTTGTAGAGTTAACGATGTGTTTGATGACACGAATGTGCAGAACTGGTTCGTGGAAATCTCGAAACTGAAAGCTAAATATGAATCGCTATGTCGCACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTTAAGGAGCTCCAAAATCTTGAAAAGCAACTTGAAGCAGCTCTTGCTCAAGCTAGACAAAGGAAGACTCAGATGATGACTGAGCAGATGGAAGATCTACGCAGAAAGGAACGACAACTCGGAGATCTGAATCGAGAGCTGAAGCTCAAGCTCGAGACAGAGGGACAAAATCTTAAAGCCATCCAAAGTTTTTGGAGCTCAAGTTCATCAGCTGCTGAACATGGCAACACCTTCCCGTTGTATCCTTCACAAGCTAGCACCATCGAGTATCAACACGAACCTATCTTACAAATCGGGTACCAAAATTATTTCTCAGAAGAGGGGCCATCTGTTCATATGGGTTATTTGAATTCCACTTAA | 1026 | 44.83 | MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGTTKTLERYQRCCFSPQDNYSERESQNWFVEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKYDQDTGAIPTLLLLSSRQLQRTRIPVEVCLGEFVENVCRVNDVFDDTNVQNWFVEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQMMTEQMEDLRRKERQLGDLNRELKLKLETEGQNLKAIQSFWSSSSSAAEHGNTFPLYPSQASTIEYQHEPILQIGYQNYFSEEGPSVHMGYLNST | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 2207273 | 2210341 | - | Cp4.1LG17g02480.1 | Cpe17g00325 | 483643 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe17g00325 | 341 | PANTHER | MADS BOX PROTEIN | 187 | 331 | - | - | |
Cpe17g00325 | 341 | PANTHER | MADS BOX PROTEIN | 1 | 141 | - | - | |
Cpe17g00325 | 341 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe17g00325 | 341 | PANTHER | MADS-BOX TRANSCRIPTION FACTOR 17 | 187 | 331 | - | - | |
Cpe17g00325 | 341 | PANTHER | MADS-BOX TRANSCRIPTION FACTOR 17 | 1 | 141 | - | - | |
Cpe17g00325 | 341 | SUPERFAMILY | SRF-like | 2 | 79 | IPR036879 | GO:0003677|GO:0046983 | |
Cpe17g00325 | 341 | Coils | Coil | 119 | 142 | - | - | |
Cpe17g00325 | 341 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe17g00325 | 341 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe17g00325 | 341 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe17g00325 | 341 | ProSiteProfiles | K-box domain profile. | 85 | 190 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cpe17g00325 | 341 | Coils | Coil | 223 | 275 | - | - | |
Cpe17g00325 | 341 | ProSiteProfiles | K-box domain profile. | 189 | 279 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cpe17g00325 | 341 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe17g00325 | 341 | Gene3D | - | 13 | 79 | IPR036879 | GO:0003677|GO:0046983 | |
Cpe17g00325 | 341 | CDD | MADS_MEF2_like | 2 | 72 | IPR033896 | GO:0000977|GO:0045944 | |
Cpe17g00325 | 341 | Pfam | K-box region | 82 | 142 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cpe17g00325 | 341 | Pfam | K-box region | 187 | 273 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cpe17g00325 | 341 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe17g00325 | 341 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe17g00325 | Cpe-Chr17:2207273 | Cpe20g00089 | Cpe-Chr20:477882 | 1.56E-19 | dispersed | |
Cpe20g00485 | Cpe-Chr20:2812620 | Cpe17g00325 | Cpe-Chr17:2207273 | 1.55E-41 | dispersed | |
Cpe17g00325 | Cpe-Chr17:2207273 | Cpe17g01070 | Cpe-Chr17:8101437 | 2.40E-24 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50788 | PF01486 | K-box | 9.50E-29 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe17g00325 | K09264 | - | csv:101219421 | 244.973 |