Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00325 ATGGGGAGAGGAAGAGTTGAACTGAAGCGAATAGAGAACAAAATCAACCGCCAAGTCACTTTCTCCAAGCGCCGTAATGGTCTACTCAAAAAAGCTTATGAACTCTCTGTTCTTTGCGATGCTGAGGTCGCTCTCATCATCTTCTCCAGCCGCGGCAAGCTCTATGAATTCGGCAGCGCCGGTACGACCAAGACACTGGAGCGATACCAACGTTGTTGCTTCTCTCCTCAAGACAATTACAGCGAACGAGAATCCCAGAACTGGTTCGTGGAAATCTCGAAACTGAAAGCTAAATATGAATCGCTATGTCGCACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTTAAGGAGCTCCAAAATCTTGAAAAGCAACTTGAAGCAGCTCTTGCTCAAGCTAGACAAAGGAAGTACGACCAAGACACTGGAGCGATACCAACGTTGTTGCTTCTCTCCTCAAGACAATTACAGCGAACGAGAATCCCAGTTGAAGTATGTTTGGGTGAGTTTGTGGAGAATGTTTGTAGAGTTAACGATGTGTTTGATGACACGAATGTGCAGAACTGGTTCGTGGAAATCTCGAAACTGAAAGCTAAATATGAATCGCTATGTCGCACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTTAAGGAGCTCCAAAATCTTGAAAAGCAACTTGAAGCAGCTCTTGCTCAAGCTAGACAAAGGAAGACTCAGATGATGACTGAGCAGATGGAAGATCTACGCAGAAAGGAACGACAACTCGGAGATCTGAATCGAGAGCTGAAGCTCAAGCTCGAGACAGAGGGACAAAATCTTAAAGCCATCCAAAGTTTTTGGAGCTCAAGTTCATCAGCTGCTGAACATGGCAACACCTTCCCGTTGTATCCTTCACAAGCTAGCACCATCGAGTATCAACACGAACCTATCTTACAAATCGGGTACCAAAATTATTTCTCAGAAGAGGGGCCATCTGTTCATATGGGTTATTTGAATTCCACTTAA 1026 44.83 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGTTKTLERYQRCCFSPQDNYSERESQNWFVEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKYDQDTGAIPTLLLLSSRQLQRTRIPVEVCLGEFVENVCRVNDVFDDTNVQNWFVEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQMMTEQMEDLRRKERQLGDLNRELKLKLETEGQNLKAIQSFWSSSSSAAEHGNTFPLYPSQASTIEYQHEPILQIGYQNYFSEEGPSVHMGYLNST 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2207273 2210341 - Cp4.1LG17g02480.1 Cpe17g00325 483643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00325 341 PANTHER MADS BOX PROTEIN 187 331 - -
Cpe17g00325 341 PANTHER MADS BOX PROTEIN 1 141 - -
Cpe17g00325 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe17g00325 341 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 187 331 - -
Cpe17g00325 341 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 141 - -
Cpe17g00325 341 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Cpe17g00325 341 Coils Coil 119 142 - -
Cpe17g00325 341 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe17g00325 341 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe17g00325 341 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe17g00325 341 ProSiteProfiles K-box domain profile. 85 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe17g00325 341 Coils Coil 223 275 - -
Cpe17g00325 341 ProSiteProfiles K-box domain profile. 189 279 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe17g00325 341 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe17g00325 341 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Cpe17g00325 341 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Cpe17g00325 341 Pfam K-box region 82 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe17g00325 341 Pfam K-box region 187 273 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe17g00325 341 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe17g00325 341 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00325 Cpe-Chr17:2207273 Cpe20g00089 Cpe-Chr20:477882 1.56E-19 dispersed
Cpe20g00485 Cpe-Chr20:2812620 Cpe17g00325 Cpe-Chr17:2207273 1.55E-41 dispersed
Cpe17g00325 Cpe-Chr17:2207273 Cpe17g01070 Cpe-Chr17:8101437 2.40E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50788 PF01486 K-box 9.50E-29 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00325 K09264 - csv:101219421 244.973