Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00350 ATGGGCTTTGGAGCGCAACGGTGGGTTGCTACCCTTCAACGACAATGCGAGTGTCTTGCTATCCTCATGTCGTCTGCTGTACCTGTTCGAGATCACACTGCGATAACTGCAGGTGGGCGACGTAGTATGCTGAAGCTAGCGCAACGAATGACAGCGAACTTCTGTGCGGGTGTGTGTGCATCGACGGTGCATAAATGGAACAAGCTGAATGCTGGTAGTGTGGATGAGGACGTACGTGTCATGACACGAAAGAGCGTCGACGATCCTGGTGAACCACCAGGCATTGTGTTGAGTGCTGCTACGTCGGTTTGGCTACCGTTATCACCACAACGACTCTTCGACTTTCTCCGGGACGAACGGTTGAGAAGCGAATGGGACATCCTATCCAATGGCGGCCCCATGCAGGAGATGGCTCATATAGCCAAAGGGCAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTCTACAAGAGACTTGCATAGATGCGGCTGGGTCCCTTGTGGTGTACGCGCCGGTGGATATTCCGGCTATGCACGTCGTGATGAACGGCGGCGATTCGGCGTATGTGGCGCTTCTGCCATCTGGGTTTGCTATAGTACCTGACGGGGCGGTGAGTCGAGGGCTGACAACGACGAACGGCAGCAGTCCAAGTGGCGGGGATGGGCCACAGAGTCAGAGAGTGACAGGCGGTGGTGGGTCCCTACTGACCGTCGCGTTTCAAATACTCGTGAATAGCCTCCCTACAGCCAAGCTCACCGTGGAATCCGTTGAAACGGGTGTGAAGAAAAAGAAAAAGAAAATGAGATGTAATGGTGGGGTAGCGGTGGTGGTAGTTGTGGTGGTGGTGGTTCGGGTATTGACTCAAGTCTACCCTCTCGAGTTCGAGTTTTCCGATGAAGAAGAAAAAGGAGTGGAGTCACGCGCCGCCGGTGGAGGTGGGGCTGGGATGTCAGATCTGTTTGGGTTATTTTCGGCTTGTTGTGACTGCCAATTGAGGGTGGACACGTGGTGGACATTAGGTGACAGTCGGGGATTGATGATGACGATGACGACGACGAACGGCGTTTCTATGAGGAGTGAGAGTGACGGTTTTTGGACGGAGACTCTGGTGGATTGGACGTCTAATCTCTGGGATTACGGGACCGTAGGATTGGATATTGTCAGGAATCCTGGGACT 1215 53.42 MGFGAQRWVATLQRQCECLAILMSSAVPVRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPLSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVSRGLTTTNGSSPSGGDGPQSQRVTGGGGSLLTVAFQILVNSLPTAKLTVESVETGVKKKKKKMRCNGGVAVVVVVVVVVRVLTQVYPLEFEFSDEEEKGVESRAAGGGGAGMSDLFGLFSACCDCQLRVDTWWTLGDSRGLMMTMTTTNGVSMRSESDGFWTETLVDWTSNLWDYGTVGLDIVRNPGT 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2471558 2474033 - Cp4.1LG17g03490.1 Cpe17g00350 483668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00350 405 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 1 271 - -
Cpe17g00350 405 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 271 IPR042160 -
Cpe17g00350 405 MobiDBLite consensus disorder prediction 220 240 - -
Cpe17g00350 405 SUPERFAMILY Bet v1-like 46 264 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01710 Cpe17g00350 CCT
Cpe03g01710 Cpe17g00350 ECH
Cpe12g00015 Cpe17g00350 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00350 Cpe-Chr17:2471558 Cpe04g00733 Cpe-Chr4:7208678 4.17E-105 dispersed
Cpe12g00015 Cpe-Chr12:67744 Cpe17g00350 Cpe-Chr17:2471558 1.18E-179 transposed
Cpe14g00118 Cpe-Chr14:638199 Cpe17g00350 Cpe-Chr17:2471558 5.44E-121 wgd
Cpe17g00350 Cpe-Chr17:2471558 Cpe09g00102 Cpe-Chr9:569079 1.13E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00350 K09338 - csv:101222248 493.812