Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe17g00369 | ATGGGCTTTCCGGTGGGTTGCACGGAGGTTTTCTTCCCCACAATATTCCTCCATTTACTCTCTCTCCTCGACTTACTAAAACGCCTAATTCTGTACCTGTTCCGCCTCCTCGGCCTCCCGGAATTTCTCCACTCCGACTCCGCCATCTCGCGGGAGGTTGGGATTCCGTTGAACCCGCCAGCCTCCGCCGTGGTCCTGCGCGAATTCCTCCCCGTAGTGAAATTCTCGGATGTTCCCCAGGCGGCGGAGGCGGCGGCAGAGAGCTGCGCCGTATGCCTGTACGAATTCGAGGGAGCAGAGGAGATCCGGTGGCTGACGAACTGCAAGCACATATTCCATAGAGGGTGTGTGGACCGTTGGATGGATCATGATCAGAAGACATGTCCGCTTTGTAGAACGCCGTTCGTGCCTGATGGGATGATGGATGAGTTCAATCAACGGCTGTGGGCCGCCTCTGGAATTGCTGAGCTTGATTCTGAGTTCAACTCGGTTTTAGGTTAG | 501 | 55.69 | MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDSAISREVGIPLNPPASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRWMDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAELDSEFNSVLG | 166 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 2668461 | 2668961 | - | Cp4.1LG17g03670.1 | Cpe17g00369 | 483687 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe17g00369 | 166 | ProSiteProfiles | Zinc finger RING-type profile. | 89 | 132 | IPR001841 | - | |
| Cpe17g00369 | 166 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 138 | IPR013083 | - | |
| Cpe17g00369 | 166 | CDD | RING-H2 | 89 | 132 | - | - | |
| Cpe17g00369 | 166 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 160 | - | - | |
| Cpe17g00369 | 166 | SUPERFAMILY | RING/U-box | 88 | 138 | - | - | |
| Cpe17g00369 | 166 | Pfam | Ring finger domain | 88 | 132 | IPR001841 | - | |
| Cpe17g00369 | 166 | PANTHER | BRH1 RING FINGER PROTEIN | 1 | 160 | - | - | |
| Cpe17g00369 | 166 | SMART | ring_2 | 89 | 131 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe13g00142 | Cpe-Chr13:1026585 | Cpe17g00369 | Cpe-Chr17:2668461 | 2.05E-40 | dispersed | |
| Cpe16g00361 | Cpe-Chr16:5310864 | Cpe17g00369 | Cpe-Chr17:2668461 | 2.38E-14 | dispersed | |
| Cpe17g00369 | Cpe-Chr17:2668461 | Cpe19g00786 | Cpe-Chr19:5951522 | 4.99E-15 | dispersed | |
| Cpe12g00386 | Cpe-Chr12:2755806 | Cpe17g00369 | Cpe-Chr17:2668461 | 9.51E-58 | wgd | |
| Cpe17g00369 | Cpe-Chr17:2668461 | Cpe03g01741 | Cpe-Chr3:13187756 | 4.41E-44 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe17g00369 | K16281 | - | csv:101220424 | 242.276 |