Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00407 ATGCCGTCCGTCTATGGAGATCGGTTGACCACTTTTGAGGACTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCTGGACCAGTCGTCGTGGCAGATGGCATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATCTGATTGGTGAAATCATTAGATTAGAAGGAGATTCTGCCACAATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTTTTACGTACTCGTAAACCATTGTCAGTGGAGTTAGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACAATTGCGAAGAGATCAGGAGATGTCTACATTCCTCGTGGTGTTGCAGTCCCTGCACTTGACAAAGACACACTTTGGGATTTTCAACCCAAAAAACTAGGTGAGGGCGACTTATTGACAGGTGGAGACTTGTATGCTACTGTCTTTGAGAATAGTCTAATGGAGCACCATATTGCACTTCCTCCTGATTCTATGGGGAAAATTACCTATGTTGCACCACCTGGTCAATATTCACTAAAGGACACTGTTTTAGAGCTTGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTTCAGACATGGCCTGTACGTACTCCTAGACCAGTTGCATCTAAGCTTGCGGCTGATACCCCTCTTTTAACTGGGCAGCGTGTTCTTGATGCCCTTTTCCCTTCTGTTCTTGGTGGAACATGTGCCATTCCTGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATACTCAAACTCTGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTTATGGATTTTCCTCAATTGACAATGACATTACCTGATGGCCGTGAAGAATCTGTCATGAAGCGTACGACCCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACAGGAATTACTTTGGCTGAATACTTCAGAGATATGGGATACAATGTAAGCATGATGGCAGATTCAACATCCCGATGGGCAGAAGCACTGCGTGAAATATCAGGACGACTGGCTGAAATGCCTGCAGATAGTGGATATCCTGCATACCTAGCAGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGTAAAGTGAAATGCCTTGGTGGGCCAGAACGAACTGGTAGTGTTACCATCGTCGGTGCAGTTTCTCCACCAGGAGGAGATTTCTCTGATCCCGTGACATCTGCTACCCTCAGTATCGTCCAGGTTTTCTGGGGTCTAGATAAAAAGCTTGCCCAGAGGAAGCACTTCCCATCCGTAAACTGGCTAATTTCGTACTCAAAATACTCTACTGCATTGGAATCTTTCTACGAGAAGTTTGATCCAGATTTTATCAGCATCAGGACAAAGGCTCGAGAAGTTCTCCAGAGGGAAGATGACCTCAATGAAATAGTCCAACTTGTAGGGAAGGATGCCTTGGCTGAAGGAGATAAGATTACCCTAGAGACTGCAAAGCTTCTGAGGGAGGACTATCTCGCTCAGAATGCATTTACTCCGTACGATAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGCAATATCATCCATTTCTATAATTTGGCTAATCAGGCAGTAGAGAGGGGAGCAGGTATGGATGGCCAAAAGATAACATACACTTTGATTAAGCATCGGTTGGGAGATCTGTTCTATCGCCTGGTGTCTCAGAAGTTCGAGGATCCAGCTGAAGGAGAAGCAGCTCTTATTGAGAAATTTAAGAAGCTACATGAAGATCTTACAAATGGTTTCCGTGCTCTCGAGGACGAAACTCGGTAG 1872 44.71 MPSVYGDRLTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTRKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDTLWDFQPKKLGEGDLLTGGDLYATVFENSLMEHHIALPPDSMGKITYVAPPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEKFDPDFISIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEAALIEKFKKLHEDLTNGFRALEDETR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3036883 3043900 + Cp4.1LG17g04490.1 Cpe17g00407 483725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00407 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524
Cpe17g00407 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 622 - -
Cpe17g00407 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034|GO:0046961
Cpe17g00407 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Cpe17g00407 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034|GO:1902600
Cpe17g00407 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 462 IPR027417 -
Cpe17g00407 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524
Cpe17g00407 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 622 IPR022878 GO:0046034|GO:0046961
Cpe17g00407 623 Coils Coil 601 621 - -
Cpe17g00407 623 Gene3D - 459 611 IPR024034 -
Cpe17g00407 623 Gene3D - 91 457 IPR027417 -
Cpe17g00407 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Cpe17g00407 623 Gene3D - 134 205 - -
Cpe17g00407 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Cpe17g00407 623 TIGRFAM V-ATPase_V1_A: V-type ATPase, A subunit 20 611 IPR005725 GO:0033180|GO:0046961|GO:1902600
Cpe17g00407 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Cpe17g00407 623 Gene3D - 20 89 IPR023366 -
Cpe17g00407 623 CDD V_A-ATPase_A 88 460 - -
Cpe17g00407 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00605 Cpe-Chr4:6326037 Cpe17g00407 Cpe-Chr17:3036883 4.75E-08 dispersed
Cpe15g00607 Cpe-Chr15:6781831 Cpe17g00407 Cpe-Chr17:3036883 2.90E-21 dispersed
Cpe12g00535 Cpe-Chr12:5497513 Cpe17g00407 Cpe-Chr17:3036883 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00407 K02145 - csv:101216234 1219.91