Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00409 ATGGACGGTATTCATGCGAGCGATGGACGGATGCATATGAGTCATGCACAGCATTCGATGCACACACAATCTGTGCAAGAACAGGAACATCATGACCTGCATTACATGAGTAATGGGAATGGAATGGCCGATGAGCATGAAAATGAAGGTCACGGTATCATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGTGATCTTGCCGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTTACCCTGTCATATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGCGAAGTACCTTTGCGTGTTCCCTCAATCCCAATAACTAATCAACCAAATGATAGGCATCTCACTGATGAAGCATTTAACCAGGCACTTGCCATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGTCAGTTCACATCTTCCAAACCCATTCAGGAAGATTCATTATCGGCCACAACAAGTTGGGAATCAAATGAGACTTGGTGTTCTGATGGAAATGGATCCCATCAACAAGAAATTCTCTGTCGACATTGTGGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCCTGCGGACTCATGTGGGCAAACAAGAAGCTTAAGGAACATTACGAAGGTTGTAAGGAACATTACGAAGGTTGTATGCTTTCTTTCTTGCTGACAAGGCATTGTTTTGTTGCTAGAATAGTGAAGAGCCTGAAAATTTGTGCAAGCTGGAAGGAGAATAGGTATATTTCTTCTGTATTGGTCAGAGTTCAGCACGACTCTGAAAATGATATGCTGCATTTAGCTGCTCTGATTTCCGTTCTAGAAATTCTTTTCCTGAAGGCTGTTAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCAAGCTTCAATAGGAATGAGAATGTTGTGCAGAATGGAGATTCTGAGTCCAACCCAAAAAGTGCATAGGAATTGTGACAGGGCAGCTGAAAAACACGTTTGGAACAGGGTAAAATGGATGCAAACAATCATATCCTTAATTAGAAAGCACCCTACTACTAGATTCACTGGATTGTGTCTTCCTGCACAAGACGAAGGCGTGGACGAGTCTCTGGGCAGCCCGAATCTGATCTGGTGTGCCAGACACGATCACTTTGCCATCAAACATCCCAGTAGTCTGGCAACAACTGCAGCACCTGGTTCATATCCAATTTCTGCAATTCGACATTGTGCACTTATAACAGCTTCTTGTGCAGGAGAATATGTTTACTCCAATCTCAGAGATGAAATCAGGGAAAAAAGAAAATGTGCAAAT 1497 44.02 MDGIHASDGRMHMSHAQHSMHTQSVQEQEHHDLHYMSNGNGMADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQPNDRHLTDEAFNQALAIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIQEDSLSATTSWESNETWCSDGNGSHQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKKLKEHYEGCKEHYEGCMLSFLLTRHCFVARIVKSLKICASWKENRYISSVLVRVQHDSENDMLHLAALISVLEILFLKAVRELCGTSQKHQTRVDKLQASIGMRMLCRMEILSPTQKVHRNCDRAAEKHVWNRVKWMQTIISLIRKHPTTRFTGLCLPAQDEGVDESLGSPNLIWCARHDHFAIKHPSSLATTAAPGSYPISAIRHCALITASCAGEYVYSNLRDEIREKRKCAN 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3051029 3057771 - Cp4.1LG17g04450.1 Cpe17g00409 483727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00409 499 CDD ZnF_GATA 230 267 IPR000679 GO:0006355|GO:0043565
Cpe17g00409 499 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Cpe17g00409 499 MobiDBLite consensus disorder prediction 1 15 - -
Cpe17g00409 499 Gene3D - 224 271 IPR013088 GO:0006355|GO:0008270
Cpe17g00409 499 PANTHER GATA TRANSCRIPTION FACTOR 28 4 265 - -
Cpe17g00409 499 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 278 - -
Cpe17g00409 499 Pfam GATA zinc finger 230 266 IPR000679 GO:0006355|GO:0043565
Cpe17g00409 499 ProSitePatterns GATA-type zinc finger domain. 230 257 IPR000679 GO:0006355|GO:0043565
Cpe17g00409 499 Pfam tify domain 84 112 IPR010399 -
Cpe17g00409 499 PANTHER GATA TRANSCRIPTION FACTOR 28 4 265 IPR045280 GO:0006355
Cpe17g00409 499 Pfam CCT motif 154 196 IPR010402 GO:0005515
Cpe17g00409 499 ProSiteProfiles CCT domain profile. 154 196 IPR010402 GO:0005515
Cpe17g00409 499 SMART tify_2 78 113 IPR010399 -
Cpe17g00409 499 MobiDBLite consensus disorder prediction 1 29 - -
Cpe17g00409 499 SMART GATA_3 224 277 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00409 - - - csv:101215755 508.834
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00537 Cpe17g00409 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00382 Cpe-Chr15:5041268 Cpe17g00409 Cpe-Chr17:3051029 1.07E-53 dispersed
Cpe17g00409 Cpe-Chr17:3051029 Cpe20g00010 Cpe-Chr20:65704 8.12E-08 dispersed
Cpe12g00537 Cpe-Chr12:5509944 Cpe17g00409 Cpe-Chr17:3051029 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g1014 . . . . . . . . Cmo08g00819 Cmo17g00616 . . . . . Cpe12g00537 Cpe17g00409 . . . . . . . . . . . . . . . . . . Lsi02g02837 Csa07g02285 . Cme01g02738 . . . . . . . . . . . Cma08g00850 Cma17g00633 Car08g00734 Car17g00597 . . Bhi09g00226 . . . . . . Cla09g00147 Cam09g0160 Cec09g0164 Cco09g0161 Clacu09g0166 . Cre09g0151 . . Chy01g02108 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe12g00537 CST 1 230 Tify Gene Family AT3G21175 54.8 9.9e-57 217.2
Cpe17g00409 CST 1 229 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Cpe07g00176 . 48 255 Tify Gene Family AT4G24470 57.3 7.9e-63 238.0
Cpe11g00472 . 48 255 Tify Gene Family AT4G24470 57.3 1.4e-62 237.3
Cpe17g00409 CST 1 264 Tify Gene Family AT1G51600 59.6 9.8e-79 290.8
Cpe12g00537 CST 1 265 Tify Gene Family AT1G51600 58.6 1.4e-77 287.0
Cpe04g00363 . 86 287 Tify Gene Family AT1G51600 57.1 4.2e-53 205.7
Cpe07g00176 . 348 521 Tify Gene Family AT1G51600 56.4 1.7e-46 183.7
Cpe11g00472 . 72 250 Tify Gene Family AT1G51600 56.0 3.8e-46 182.6
Cpe07g00176 . 48 255 Tify Gene Family AT4G24470 57.3 7.9e-63 238.0
Cpe11g00472 . 48 255 Tify Gene Family AT4G24470 57.3 1.4e-62 237.3
Cpe17g00409 CST 1 264 Tify Gene Family AT1G51600 59.6 9.8e-79 290.8
Cpe12g00537 CST 1 265 Tify Gene Family AT1G51600 58.6 1.4e-77 287.0
Cpe04g00363 . 86 287 Tify Gene Family AT1G51600 57.1 4.2e-53 205.7
Cpe07g00176 . 348 521 Tify Gene Family AT1G51600 56.4 1.7e-46 183.7
Cpe11g00472 . 72 250 Tify Gene Family AT1G51600 56.0 3.8e-46 182.6
Cpe12g00537 CST 1 230 Tify Gene Family AT3G21175 54.8 9.9e-57 217.2
Cpe17g00409 CST 1 229 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Cpe12g00176 CST 1 180 Tify Gene Family AT4G14713 52.6 4.0e-45 178.7
Cpe17g00164 CST 1 180 Tify Gene Family AT4G14713 51.6 2.6e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50795 PF06203 CCT 1.70E-14 CL0281 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00409 Cpe_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0