Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00409 ATGGACGGTATTCATGCGAGCGATGGACGGATGCATATGAGTCATGCACAGCATTCGATGCACACACAATCTGTGCAAGAACAGGAACATCATGACCTGCATTACATGAGTAATGGGAATGGAATGGCCGATGAGCATGAAAATGAAGGTCACGGTATCATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGTGATCTTGCCGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTTACCCTGTCATATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGCGAAGTACCTTTGCGTGTTCCCTCAATCCCAATAACTAATCAACCAAATGATAGGCATCTCACTGATGAAGCATTTAACCAGGCACTTGCCATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGTCAGTTCACATCTTCCAAACCCATTCAGGAAGATTCATTATCGGCCACAACAAGTTGGGAATCAAATGAGACTTGGTGTTCTGATGGAAATGGATCCCATCAACAAGAAATTCTCTGTCGACATTGTGGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCCTGCGGACTCATGTGGGCAAACAAGAAGCTTAAGGAACATTACGAAGGTTGTAAGGAACATTACGAAGGTTGTATGCTTTCTTTCTTGCTGACAAGGCATTGTTTTGTTGCTAGAATAGTGAAGAGCCTGAAAATTTGTGCAAGCTGGAAGGAGAATAGGTATATTTCTTCTGTATTGGTCAGAGTTCAGCACGACTCTGAAAATGATATGCTGCATTTAGCTGCTCTGATTTCCGTTCTAGAAATTCTTTTCCTGAAGGCTGTTAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCAAGCTTCAATAGGAATGAGAATGTTGTGCAGAATGGAGATTCTGAGTCCAACCCAAAAAGTGCATAGGAATTGTGACAGGGCAGCTGAAAAACACGTTTGGAACAGGGTAAAATGGATGCAAACAATCATATCCTTAATTAGAAAGCACCCTACTACTAGATTCACTGGATTGTGTCTTCCTGCACAAGACGAAGGCGTGGACGAGTCTCTGGGCAGCCCGAATCTGATCTGGTGTGCCAGACACGATCACTTTGCCATCAAACATCCCAGTAGTCTGGCAACAACTGCAGCACCTGGTTCATATCCAATTTCTGCAATTCGACATTGTGCACTTATAACAGCTTCTTGTGCAGGAGAATATGTTTACTCCAATCTCAGAGATGAAATCAGGGAAAAAAGAAAATGTGCAAAT 1497 44.02 MDGIHASDGRMHMSHAQHSMHTQSVQEQEHHDLHYMSNGNGMADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQPNDRHLTDEAFNQALAIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIQEDSLSATTSWESNETWCSDGNGSHQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKKLKEHYEGCKEHYEGCMLSFLLTRHCFVARIVKSLKICASWKENRYISSVLVRVQHDSENDMLHLAALISVLEILFLKAVRELCGTSQKHQTRVDKLQASIGMRMLCRMEILSPTQKVHRNCDRAAEKHVWNRVKWMQTIISLIRKHPTTRFTGLCLPAQDEGVDESLGSPNLIWCARHDHFAIKHPSSLATTAAPGSYPISAIRHCALITASCAGEYVYSNLRDEIREKRKCAN 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3051029 3057771 - Cp4.1LG17g04450.1 Cpe17g00409 483727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00409 499 CDD ZnF_GATA 230 267 IPR000679 GO:0006355|GO:0043565
Cpe17g00409 499 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Cpe17g00409 499 MobiDBLite consensus disorder prediction 1 15 - -
Cpe17g00409 499 Gene3D - 224 271 IPR013088 GO:0006355|GO:0008270
Cpe17g00409 499 PANTHER GATA TRANSCRIPTION FACTOR 28 4 265 - -
Cpe17g00409 499 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 278 - -
Cpe17g00409 499 Pfam GATA zinc finger 230 266 IPR000679 GO:0006355|GO:0043565
Cpe17g00409 499 ProSitePatterns GATA-type zinc finger domain. 230 257 IPR000679 GO:0006355|GO:0043565
Cpe17g00409 499 Pfam tify domain 84 112 IPR010399 -
Cpe17g00409 499 PANTHER GATA TRANSCRIPTION FACTOR 28 4 265 IPR045280 GO:0006355
Cpe17g00409 499 Pfam CCT motif 154 196 IPR010402 GO:0005515
Cpe17g00409 499 ProSiteProfiles CCT domain profile. 154 196 IPR010402 GO:0005515
Cpe17g00409 499 SMART tify_2 78 113 IPR010399 -
Cpe17g00409 499 MobiDBLite consensus disorder prediction 1 29 - -
Cpe17g00409 499 SMART GATA_3 224 277 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00537 Cpe17g00409 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00382 Cpe-Chr15:5041268 Cpe17g00409 Cpe-Chr17:3051029 1.07E-53 dispersed
Cpe17g00409 Cpe-Chr17:3051029 Cpe20g00010 Cpe-Chr20:65704 8.12E-08 dispersed
Cpe12g00537 Cpe-Chr12:5509944 Cpe17g00409 Cpe-Chr17:3051029 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50795 PF06203 CCT 1.70E-14 CL0281 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00409 - - csv:101215755 508.834