Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00412 ATGACGTCTCGTGGTTCATCGGCTTCGGGCAATGGCCTATTTCCGCTCAACGCTTCCACGTCCGGCCGGCAAGACGATGTTGAGGCTGGGCTCTCCTCCGGCAAAAGCATTAACAAGGAGGAGGAAGAAGAGGTTTCCGATCCTTTTGATGTCGACAATACCAAAAACGTCCCGCTCGAGATACTCAAGCGATGGAGGCAAGCTGCGTTGGTGCTTAATGCATCTCGGAGATTTCGATATACTTTGGATTTAAAAAAGGAGGAAGAGAAAGAGAAAAGAAGAAGGATGATTAGAGCCCACTCTCAAGTTATAAGGGCAGCACTGCTTTTCAAATTGGCAGGGGAACAACAAACTGGTTTCTCAGTACCACCTCCAACGTCAACTGGTGACTATGGCATTAATTTAGAACATCTTGTCTCACTGACCCGTGAACAAAACTTTTCTTCTCTACAACAATATGGAGGAGTCAAAGGCTTATCAAATTTATTGAAAACAAATACCGATAAAGGAATACCGGGGGATGAAACTGATTTACTAAAAAGAAGAAATACCTTTGGATCAAATACATATCCACGTAAAAAAGGACGGAGTTTCTTGAGATTTCTTTGGGAAGCCTGGCAAGATTTAACCCTAATCATCTTGATTATAGCTGCAGTGGCATCATTAGCTTTGGGAATGAAAACAAAGGGTGTAAAGGAAGGATGGTATGACGGAGGAAGCATTTCCTTTGCTGTGTTTCTTGTCATAATGGTCACAGCGGTCAGTGATTATCGACAGTCTCTTCAGTTTCAAAACTTAAATGAGGAAAAACAGAACATACAAGTAGAGATCTTGAGGGATGGTAGAACTTTAAAGGTCTCAATATTTGATATCGTTGTTGGAGATGTTGTACCTCTTAAAATTGGAGATCAGATCCCTGCTGATGGAATATTAATCACCGGTCATTCACTTGCCATAGATGAATCTAGCATGACTGGCGAAAGCAAGATTGTAACTGCTGTTGGAATCAATACTGAATGGGGATTGTTGATGGCCAGTATCTCAGAGGATACTGGGGAAGAAACTCCCTTGCAGGTCCGGTTGAACGGAGTTGCAACTTTCATAGGCATAGTTGGGCTTGCGGTTGCAGTCTCTGTGCTAGCTATCCTTTTGGGCAGATACTTCACTGGAAATACACATGATGCAAATGGAAACATTGAATTTCAGCGTGGGCATACGAGTCTAGGTGATGCTGTAAATGGAGTAATTAGAATCGTTACTGTTGCTGTTACTATTGTGGTTGTTGCAGTGCCTGAAGGACTTCCTTTGGCTGTCACTCTAACATTAGCGTACTCCATGCGGAAAATGATGGCCGATAAAGCATTGGTTCGTAGACTGTCTGCTTGCGAAACTATGGGTTCTGCAACAACAATTTGCAGTGATAAGACTGGAACGTTGACTTTAAATCAGCCNGTGGTCGAGGCATGTGTTGGCAAGAAAATGATGAATCCCCCAGATGAGCCACTGGAGTTGCAGTCACTGGTTCTCAATCTGCTATATGAGGGCATTGCTCAGAACAGCGCAGGCAATGTTTTTGTTGCTATGGATGGGAGAAGTATAGAGGTCACTGGATCTCCTACAGAAAAGGCTATTTTATCTTGGGCTGTCAAGCTGGGAATGAAGTATGATGTTGTCAAATCAGAGTCTGAAGTTCTTCATGTTGTCCCGTTCAATTCAGAAAAGAAGCGAGGAGGTGTTGCGATAAAGCGGGCTGACTCAGAAGTCTACATACACTGGAAAGGAGCGGCAGAGATGGTCTTATCTTCTTGTACAAAGTATATGGGAATGAATTGTGAAGTGCACTCAATGGAAGGCAATGAGGATTATTTTAAGGCAGCTATTAATGATATGGCTGCAAGAAGTTTGCGTTGTGTTGCGATTGCATATAGACCATATGAATTAGAGAAGGTTCCAGTAGATGAACAGGGTTTGGATCAATGGGAATTGCCTGCTGATGATCTTATTCTGCTTGCAATTGTTGGTATAAAGGATCCTTGTCGTGCTGGTGTTAAAGAGGCTGTGAAAGTGTGCACGGATGCTGGCGTCAAGGTGCGCATGGTAACTGGAGACAATATACAGACCGCCAAAGCTATAGCAATAGAGTGTGGAATACTTAGCGCAACAGACGATGCTTCTGAGCCGACAGTAATTGAAGGAAAAGAATTCCGTGTATTGTCTGAGAAGGAAAGAGAACAAGTTGCCCCAAAAATAACGGTGATGGGGAGGTCTTCACCCAATGACAAGCTCTTGCTTGTTCAAGCATTAAGAAAGGGAGGAGACGTCGTTGCTGTAACAGGCGATGGGACAAATGATGCCCCTGCACTCCACGAGGCAGATATCGGTCTTTCTATGGGCATACAAGGCACTGAAGTTGCGAAAGAAAGTTCTGATATTGTTATCTTGGATGATAACTTTGCTTCAGTTGTAAAGGTTGTCCGGTGGGGGCGTTCTGTGTATGCAAACATTCAGAAGTTCATCCAGTTTCAGCTCACTGTAAATGTTGCCGCTCTTGTGATTAATGTTGTTGCCGCTGTGTCTTCCGGTGATGTTCCTTTAAATACTGTGCAGCTTCTCTGGGTTAACCTGATCATGGACACACTCGGTGCTCTAGCATTAGCTACTGAACCACCAACGGACCACTTGATGCATCGGTCACCTGTTGGTCGAAGGAATTTGATTGTACAGGCTTTGTATCAAGTTGCTGTCCTTCTTGTTCTCAACTTCTATGCCACTGATATTCTTCAATTGAATACTGATAGCAAGGAGCACGCCTTTAATGTGAAGAATACAGTGATTTTCAATGCCTTTGTCCTCTGCCAAATATTCAATGAATTTAACGCTCGAAAACCAGATGAAATGAACGTATTCAGTGGCGTGACGAAAAATTACCTCTTTATGGGAATAGTTGGAACAACGTTCTTGCTTCAGATTATCATCGTCGAATTTCTAGGAAAATTTACTTCCACAGTAAAACTTGATGGGAAGCAATGGCTTATCTGCATTGCTATCGGCCTTGTGAGCTGGCCTCTGGCTGTCGTCGGCAAACTGATTCCAGTTCCTGAGACTCCATTGGGTAAATACTTCACAAAGCTAGTTCAACGGTACAGGAGGTCACATGGTGCTTAA 3165 43.44 MTSRGSSASGNGLFPLNASTSGRQDDVEAGLSSGKSINKEEEEEVSDPFDVDNTKNVPLEILKRWRQAALVLNASRRFRYTLDLKKEEEKEKRRRMIRAHSQVIRAALLFKLAGEQQTGFSVPPPTSTGDYGINLEHLVSLTREQNFSSLQQYGGVKGLSNLLKTNTDKGIPGDETDLLKRRNTFGSNTYPRKKGRSFLRFLWEAWQDLTLIILIIAAVASLALGMKTKGVKEGWYDGGSISFAVFLVIMVTAVSDYRQSLQFQNLNEEKQNIQVEILRDGRTLKVSIFDIVVGDVVPLKIGDQIPADGILITGHSLAIDESSMTGESKIVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVAVSVLAILLGRYFTGNTHDANGNIEFQRGHTSLGDAVNGVIRIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQPVVEACVGKKMMNPPDEPLELQSLVLNLLYEGIAQNSAGNVFVAMDGRSIEVTGSPTEKAILSWAVKLGMKYDVVKSESEVLHVVPFNSEKKRGGVAIKRADSEVYIHWKGAAEMVLSSCTKYMGMNCEVHSMEGNEDYFKAAINDMAARSLRCVAIAYRPYELEKVPVDEQGLDQWELPADDLILLAIVGIKDPCRAGVKEAVKVCTDAGVKVRMVTGDNIQTAKAIAIECGILSATDDASEPTVIEGKEFRVLSEKEREQVAPKITVMGRSSPNDKLLLVQALRKGGDVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRRNLIVQALYQVAVLLVLNFYATDILQLNTDSKEHAFNVKNTVIFNAFVLCQIFNEFNARKPDEMNVFSGVTKNYLFMGIVGTTFLLQIIIVEFLGKFTSTVKLDGKQWLICIAIGLVSWPLAVVGKLIPVPETPLGKYFTKLVQRYRRSHGA 1054
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3084095 3100346 + Cp4.1LG17g04530.1 Cpe17g00412 483730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00412 1054 SUPERFAMILY HAD-like 470 883 IPR036412 -
Cpe17g00412 1054 PANTHER CALCIUM-TRANSPORTING ATPASE 332 1046 - -
Cpe17g00412 1054 Pfam E1-E2 ATPase 272 331 - -
Cpe17g00412 1054 Pfam E1-E2 ATPase 330 450 - -
Cpe17g00412 1054 SMART Cation_ATPase_N_a_2 152 226 IPR004014 -
Cpe17g00412 1054 PRINTS P-type cation-transporting ATPase superfamily signature 802 814 - -
Cpe17g00412 1054 PRINTS P-type cation-transporting ATPase superfamily signature 778 797 - -
Cpe17g00412 1054 PRINTS P-type cation-transporting ATPase superfamily signature 472 486 - -
Cpe17g00412 1054 PRINTS P-type cation-transporting ATPase superfamily signature 671 682 - -
Cpe17g00412 1054 PRINTS P-type cation-transporting ATPase superfamily signature 320 334 - -
Cpe17g00412 1054 PRINTS P-type cation-transporting ATPase superfamily signature 693 703 - -
Cpe17g00412 1054 Pfam Cation transporter/ATPase, N-terminus 154 221 IPR004014 -
Cpe17g00412 1054 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 412 493 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe17g00412 1054 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 745 858 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe17g00412 1054 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 1032 IPR023298 -
Cpe17g00412 1054 Pfam Ca2+-ATPase N terminal autoinhibitory domain 47 89 IPR024750 GO:0005516
Cpe17g00412 1054 MobiDBLite consensus disorder prediction 1 51 - -
Cpe17g00412 1054 SFLD C1.7: P-type atpase like 454 830 - -
Cpe17g00412 1054 MobiDBLite consensus disorder prediction 1 27 - -
Cpe17g00412 1054 Pfam haloacid dehalogenase-like hydrolase 469 792 - -
Cpe17g00412 1054 Gene3D - 349 1022 - -
Cpe17g00412 1054 SFLD p-type atpase 454 830 IPR044492 -
Cpe17g00412 1054 SUPERFAMILY Calcium ATPase, transduction domain A 273 335 IPR008250 -
Cpe17g00412 1054 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 330 1032 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cpe17g00412 1054 ProSitePatterns E1-E2 ATPases phosphorylation site. 474 480 IPR018303 -
Cpe17g00412 1054 Gene3D - 204 259 - -
Cpe17g00412 1054 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 479 675 IPR023299 GO:0000166
Cpe17g00412 1054 Gene3D - 59 112 - -
Cpe17g00412 1054 PANTHER CATION TRANSPORTING ATPASE 332 1046 - -
Cpe17g00412 1054 PANTHER CATION TRANSPORTING ATPASE 35 332 - -
Cpe17g00412 1054 Gene3D - 482 678 IPR023299 GO:0000166
Cpe17g00412 1054 Gene3D - 331 348 - -
Cpe17g00412 1054 Pfam Cation transporting ATPase, C-terminus 863 1030 IPR006068 -
Cpe17g00412 1054 Gene3D - 177 330 - -
Cpe17g00412 1054 Gene3D - 469 823 IPR023214 -
Cpe17g00412 1054 PANTHER CALCIUM-TRANSPORTING ATPASE 35 332 - -
Cpe17g00412 1054 PRINTS Sodium/potassium-transporting ATPase signature 239 259 - -
Cpe17g00412 1054 PRINTS Sodium/potassium-transporting ATPase signature 590 608 - -
Cpe17g00412 1054 PRINTS Sodium/potassium-transporting ATPase signature 850 871 - -
Cpe17g00412 1054 PRINTS Sodium/potassium-transporting ATPase signature 465 486 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00645 Cpe-Chr11:4243340 Cpe17g00412 Cpe-Chr17:3084095 0 dispersed
Cpe17g00412 Cpe-Chr17:3084095 Cpe17g00875 Cpe-Chr17:6800597 0 dispersed
Cpe17g00412 Cpe-Chr17:3084095 Cpe07g00763 Cpe-Chr7:6709252 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00412 K01537 - csv:101214801 1756.5