Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00420 ATGGGGGAAAACTGGGTGATTGATTTGAGGCGCTCATATGATTCCTGTTCTGCGCAGAGAGGGAGGACGATGGGTTTAGGGAGTAGAGAGAAGACAATGAATTGGAGGTGGATGGAGATGGTTTCTCTCATCGTTCTTTGCATTCTGGGGTTGAAGCTTACCTCCATTGAAGCTGCCACAGATCCATCAGATGCCTCTGCTTTAAGAGTTTTGTATACCAGCTTGAACTCGCCCCCTCAGTTAACCCAGTGGAATGCTAATGGCGATGATCCATGTGGACAATCATGGAAAGGGATTACTTGCTCTGGCACACGGGTTACAGAAATAAACTTGTCTGGCCTCGCTCTCAGTGGATCGATGGGATACCAACTTGCAAGTTTGACATCGTTAACCAACCTAGATATGAGCAATAACAATATTGGAGGCAATATAGTCTACCAACTTCCACCATTCCTGCAGAGACTAAATCTTGCTCAAAACAGCTTCACTGAAGGCATCCCTTATTCCATTTCACAGATGACAACTCTTCGATACCTAAATCTCAGTCATAATCAGCTTCAGAATCCATTGATTGATATGTATGGGCAGCTTACTTCCCTATCCACATTGGATCTGTCTTTCAATGCTATGTCAGGCGAACTGCCTCAGAGTTTTAGCTCGCTTTCGAGCATCAGCACTATGAATTTGCAAAACAATCAGTTCACTGGCACAATTAATGTCCTCGGAAATCTTCCTCTGGATAACCTGAACGTTGAAAACAACCGTTTCTCTGGCTGGATCCCTGAGCAACTGAAAAGCATCAATCTTCAGACAAATGGCAACTCCTGGAACTCAGGTCCTGCACCCCCTCCTCCTCCTGGTACACCTCCGGCAACTAGAAGGAACCGAAATCACGATTCTGGTGGCAATAGTCCATCAAATGGTGGTTCTGGTGAAGGTCAGAAATCAGGAATTAGTGGTGGTGCCATTGCAGGAATTATCATCTCTGTGCTCGTCGTTGGAGCTGTAGTAGCATTCTTCATTGTTAGGAAGAGATCCAGGAGATCATCATCTGCAGACATTGAAAAGCTCGACAATCAACCCCCGCAACCTCGTCAAATGACTCCAGCACAAGAAATAAAGTCCGAAGAAACTTCCTCCACATTTTATCCAACATCATTTGATACTTCTGCTGCAATTAATCTCAAACCCCCTCCTAGTGATCGTCATAAATCACTTGATGAAGACGACTTTGCTAAAAGAGCTGTTGTCAAGAAGGCTAGTGCAGCTCCTATTAATGTAAAGTCATATTCGATAGCAGACCTGCAATTGGCTACTGGTAGCTTCAATTTTGAAAATCTTCTTGGTGAGGGATCGTTTGGACGTGTTTATCGGGCTGAGTTTGATGATGGGAAGATTCTTGCCGTGAAAAAAATCAATTCGGCTGTACTACCTGGGGATTTATCTGAAGATTTCACCGACATTGTTTCGAAAGTCTCCGAGTTACACCATCCCAATATAACCGAGCTCGTGGGTTATTGCTCTGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTATGATTTCTTGCATCATTCAGACGAATACAACCAGCCACTGATATGGAATAGTCGTGTTAAGATTGCTTTGGGAACAGCCCGTGCACTAGAGTATCTTCATGAAGTTTGCTCCCCATCAATTGTTCATAGAAACATCAAGTCAGCTAACATACTGCTGGATGCGGAACTCAGCCCCCACCTCTCTGATTCTGGACTGGAAAGCTTTGTACCAAATGCAGATCAGGCACTGGATCACAATGCAAGTTCAGGATACACTGCCCCCGAGGTCACGATGTCTGGCCTTTATACGCTGAAAAGCGATGTCTACAGCTTTGGAGTAGTCATGTTGGAACTGTTGACTGGGCGCAAACCATTCGACAGTTCAAGACCAAGGACCGAGCAATCCTTGGTTCGATGGGCTACACCCCAGCTTCATGACATTAATGCGTTGACCAAGATGGTGGATCCAGAACTCCAAGGACTATATCCAGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCACTTTGCGTCCAGACCGAACCAGAGTTCAGACCTCCAATGTCGGAAGTGGTGGAAGCATTGGTTCGACTTGTCCAGCGAGCTAACATGAGTAAGAGAACATATGGAAATGATAACGCAGCAGCGTCTCCCAGAGGAGGGGGGAACATGGGTGGGGAGGATACACCATAA 2250 45.47 MGENWVIDLRRSYDSCSAQRGRTMGLGSREKTMNWRWMEMVSLIVLCILGLKLTSIEAATDPSDASALRVLYTSLNSPPQLTQWNANGDDPCGQSWKGITCSGTRVTEINLSGLALSGSMGYQLASLTSLTNLDMSNNNIGGNIVYQLPPFLQRLNLAQNSFTEGIPYSISQMTTLRYLNLSHNQLQNPLIDMYGQLTSLSTLDLSFNAMSGELPQSFSSLSSISTMNLQNNQFTGTINVLGNLPLDNLNVENNRFSGWIPEQLKSINLQTNGNSWNSGPAPPPPPGTPPATRRNRNHDSGGNSPSNGGSGEGQKSGISGGAIAGIIISVLVVGAVVAFFIVRKRSRRSSSADIEKLDNQPPQPRQMTPAQEIKSEETSSTFYPTSFDTSAAINLKPPPSDRHKSLDEDDFAKRAVVKKASAAPINVKSYSIADLQLATGSFNFENLLGEGSFGRVYRAEFDDGKILAVKKINSAVLPGDLSEDFTDIVSKVSELHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHHSDEYNQPLIWNSRVKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAELSPHLSDSGLESFVPNADQALDHNASSGYTAPEVTMSGLYTLKSDVYSFGVVMLELLTGRKPFDSSRPRTEQSLVRWATPQLHDINALTKMVDPELQGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGNDNAAASPRGGGNMGGEDTP 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3144363 3149215 + Cp4.1LG17g04370.1 Cpe17g00420 483738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00420 749 MobiDBLite consensus disorder prediction 270 316 - -
Cpe17g00420 749 MobiDBLite consensus disorder prediction 728 749 - -
Cpe17g00420 749 Gene3D Phosphorylase Kinase; domain 1 404 519 - -
Cpe17g00420 749 Pfam Leucine Rich repeat 127 145 IPR001611 GO:0005515
Cpe17g00420 749 Pfam Leucine Rich repeat 173 188 IPR001611 GO:0005515
Cpe17g00420 749 PANTHER OS01G0253100 PROTEIN 51 735 IPR045271 GO:0004714|GO:0006468
Cpe17g00420 749 MobiDBLite consensus disorder prediction 293 314 - -
Cpe17g00420 749 SUPERFAMILY L domain-like 60 266 - -
Cpe17g00420 749 CDD STKc_IRAK 448 717 - -
Cpe17g00420 749 MobiDBLite consensus disorder prediction 355 380 - -
Cpe17g00420 749 ProSitePatterns Protein kinases ATP-binding region signature. 448 471 IPR017441 GO:0005524
Cpe17g00420 749 ProSiteProfiles Protein kinase domain profile. 442 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00420 749 Gene3D Ribonuclease Inhibitor 61 285 IPR032675 -
Cpe17g00420 749 SUPERFAMILY Protein kinase-like (PK-like) 425 714 IPR011009 -
Cpe17g00420 749 Pfam Leucine rich repeat N-terminal domain 62 102 IPR013210 -
Cpe17g00420 749 Gene3D Transferase(Phosphotransferase) domain 1 521 737 - -
Cpe17g00420 749 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 51 735 - -
Cpe17g00420 749 MobiDBLite consensus disorder prediction 350 380 - -
Cpe17g00420 749 Pfam Protein tyrosine and serine/threonine kinase 443 714 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00420 - - - csv:101213107 1132.09
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g01752 Cpe17g00420 CCT
Cpe12g00545 Cpe17g00420 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00968 Cpe-Chr2:8570055 Cpe17g00420 Cpe-Chr17:3144363 1.61E-156 dispersed
Cpe02g01752 Cpe-Chr2:14286057 Cpe17g00420 Cpe-Chr17:3144363 0 dispersed
Cpe17g00420 Cpe-Chr17:3144363 Cpe20g00626 Cpe-Chr20:3917624 0 dispersed
Cpe13g00020 Cpe-Chr13:181595 Cpe17g00420 Cpe-Chr17:3144363 2.45E-177 transposed
Cpe12g00545 Cpe-Chr12:5586848 Cpe17g00420 Cpe-Chr17:3144363 0 wgd
Cpe17g00420 Cpe-Chr17:3144363 Cpe03g01037 Cpe-Chr3:8458185 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g7 Blo05g00016 . . . . . . Bma13g01189 Cmo08g00808 Cmo17g00626 Cma01g00022 . Car01g00018 Car14g01082 . Cpe12g00545 Cpe17g00420 Bhi01g02818 . . . . . . . . . . . . . . Cone17ag0031 . . Lsi02g02850 Csa07g02300 . Cme01g02755 . Blo10g00947 . . . Bpe09g00053 Bma09g01001 . . Cmo01g00024 . Cma08g00837 Cma17g00644 Car08g00721 Car17g00608 Cpe02g01752 . Bhi09g00253 . . . . . . Cla09g00135 . . . . . . . Csa03g02807 Chy01g02121 .
Vvi9g912 . Blo06g00642 . . . . Bma10g00705 Bma13g00656 Cmo08g00578 Cmo17g00626 . . . . . Cpe12g00545 Cpe17g00420 . . . . . . . . . . . . . . . . . . Lsi02g02849 Csa07g02298 . Cme01g02547 . Blo10g00501 . Bda12g00560 . Bpe09g00456 . . Sed14g0708 . . . Cma17g00644 . Car17g00606 . . Bhi09g00536 Tan06g0478 Cmetu08g0001 . Hepe03g1671 . . . . . . . . . . . Chy01g02120 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g00762 CST 33 782 Strubbelig Receptor Gene Family AT4G03390 62.4 1.9e-206 716.5
Cpe15g00790 CST 68 761 Strubbelig Receptor Gene Family AT4G03390 60.0 2.7e-181 632.9
Cpe12g00545 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.8 8.9e-92 335.5
Cpe17g00420 CCT,CST 417 720 Strubbelig Receptor Gene Family AT4G03390 55.8 1.9e-89 327.8
Cpe03g00381 . 17 738 Strubbelig Receptor Gene Family AT5G06820 52.7 1.1e-179 627.5
Cpe08g01391 CCT 9 720 Strubbelig Receptor Gene Family AT5G06820 52.6 3.1e-179 625.9
Cpe01g00878 . 10 724 Strubbelig Receptor Gene Family AT1G78980 56.9 7.1e-181 631.3
Cpe03g01037 . 23 724 Strubbelig Receptor Gene Family AT1G78980 51.8 1.3e-153 540.8
Cpe17g00420 CCT,CST 44 723 Strubbelig Receptor Gene Family AT1G78980 50.4 5.0e-126 449.1
Cpe15g00790 CST 458 753 Strubbelig Receptor Gene Family AT1G78980 52.9 1.1e-83 308.5
Cpe04g00762 CST 32 656 Strubbelig Receptor Gene Family AT2G20850 50.6 1.2e-129 461.1
Cpe01g00878 . 5 702 Strubbelig Receptor Gene Family AT3G13065 50.4 8.9e-136 481.5
Cpe17g00420 CCT,CST 38 718 Strubbelig Receptor Gene Family AT3G13065 50.2 6.9e-104 375.6
Cpe12g00545 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.1 7.9e-100 362.1
Cpe20g00626 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.1 4.2e-85 313.2
Cpe12g00545 CCT,CST 375 685 Strubbelig Receptor Gene Family AT1G11130 50.8 2.3e-83 307.4
Cpe17g00420 CCT,CST 430 718 Strubbelig Receptor Gene Family AT1G11130 52.6 1.2e-82 305.1
Cpe04g00762 CST 32 656 Strubbelig Receptor Gene Family AT2G20850 50.6 1.2e-129 461.1
Cpe03g00381 . 17 738 Strubbelig Receptor Gene Family AT5G06820 52.7 1.1e-179 627.5
Cpe08g01391 CCT 9 720 Strubbelig Receptor Gene Family AT5G06820 52.6 3.1e-179 625.9
Cpe04g00762 CST 33 782 Strubbelig Receptor Gene Family AT4G03390 62.4 1.9e-206 716.5
Cpe15g00790 CST 68 761 Strubbelig Receptor Gene Family AT4G03390 60.0 2.7e-181 632.9
Cpe12g00545 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.8 8.9e-92 335.5
Cpe17g00420 CCT,CST 417 720 Strubbelig Receptor Gene Family AT4G03390 55.8 1.9e-89 327.8
Cpe01g00878 . 5 702 Strubbelig Receptor Gene Family AT3G13065 50.4 8.9e-136 481.5
Cpe17g00420 CCT,CST 38 718 Strubbelig Receptor Gene Family AT3G13065 50.2 6.9e-104 375.6
Cpe12g00545 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.1 7.9e-100 362.1
Cpe01g00878 . 10 724 Strubbelig Receptor Gene Family AT1G78980 56.9 7.1e-181 631.3
Cpe03g01037 . 23 724 Strubbelig Receptor Gene Family AT1G78980 51.8 1.3e-153 540.8
Cpe17g00420 CCT,CST 44 723 Strubbelig Receptor Gene Family AT1G78980 50.4 5.0e-126 449.1
Cpe15g00790 CST 458 753 Strubbelig Receptor Gene Family AT1G78980 52.9 1.1e-83 308.5
Cpe03g01037 . 1 724 Strubbelig Receptor Gene Family AT1G53730 59.6 2.3e-211 732.6
Cpe02g01752 CCT 557 1203 Strubbelig Receptor Gene Family AT1G53730 56.9 7.8e-183 637.9
Cpe17g00420 CCT,CST 33 731 Strubbelig Receptor Gene Family AT1G53730 59.1 8.9e-179 624.4
Cpe12g00545 CCT,CST 1 698 Strubbelig Receptor Gene Family AT1G53730 59.9 1.3e-177 620.5
Cpe20g00626 . 4 689 Strubbelig Receptor Gene Family AT1G53730 50.5 8.7e-142 501.5
Cpe15g00790 CST 461 753 Strubbelig Receptor Gene Family AT1G53730 57.3 6.6e-89 325.9
Cpe03g01037 . 8 719 Strubbelig Receptor Gene Family AT3G14350 50.8 2.0e-180 629.8
Cpe17g00420 CCT,CST 42 729 Strubbelig Receptor Gene Family AT3G14350 54.2 5.2e-160 562.0
Cpe12g00545 CCT,CST 6 702 Strubbelig Receptor Gene Family AT3G14350 53.6 9.2e-157 551.2
Cpe15g00790 CST 460 761 Strubbelig Receptor Gene Family AT3G14350 52.6 7.2e-77 285.8
Cpe20g00626 . 344 711 Strubbelig Receptor Gene Family AT4G22130 79.6 3.2e-168 589.0
Cpe03g01037 . 408 731 Strubbelig Receptor Gene Family AT4G22130 63.8 2.1e-119 426.8
Cpe12g00545 CCT,CST 391 707 Strubbelig Receptor Gene Family AT4G22130 64.6 2.6e-117 419.9
Cpe17g00420 CCT,CST 424 733 Strubbelig Receptor Gene Family AT4G22130 65.4 2.9e-116 416.4
Cpe04g00762 CST 450 774 Strubbelig Receptor Gene Family AT4G22130 56.8 3.5e-106 382.9
Cpe15g00790 CST 458 753 Strubbelig Receptor Gene Family AT4G22130 60.3 8.7e-105 378.3
Cpe01g00878 . 407 724 Strubbelig Receptor Gene Family AT4G22130 55.7 5.8e-101 365.5
Cpe02g00968 . 332 573 Strubbelig Receptor Gene Family AT4G22130 75.2 5.7e-96 349.0
Cpe03g00381 . 392 714 Strubbelig Receptor Gene Family AT4G22130 51.7 8.5e-92 335.1
Cpe02g01752 CCT 953 1219 Strubbelig Receptor Gene Family AT4G22130 51.1 1.8e-86 317.4
Cpe03g00382 CCT 281 582 Strubbelig Receptor Gene Family AT4G22130 50.3 1.1e-80 298.1
Cpe10g00833 . 439 622 Strubbelig Receptor Gene Family AT4G22130 54.9 2.4e-54 210.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62944 PF07714 PK_Tyr_Ser-Thr 5.90E-43 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00420 Cpe_Chr17 FPKM 0.0 0.0 0.0 0.341666 0.0 0.0 0.885549 0.983579 1.358931 0.679537