Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00426 ATGTGGTGGAGATCGGCTTCTTTCATCCTGGACAAGCAGCAAACTGAAGGCGTTTCAAAGGCCGCTGAAACCCTTTCAATTTCACCGCCTGTCGACGAATCTTCTATGGCGGACACTTTCCAGAACCCTAACCCTAAAATCTCTGCCTATTATCAAAGTAGGGCTTCTCATACCGCCGTCGTCACCAGTGATTGGCTCGCCCAGGCGCAAGCTGCTGTCGGATTCCCGACCGACGAACAATTGTTATCGGAAGCTGATGTTCGGGACTCTGAATCTGGCAAGCCTTTCAGTGTGATCGATGAGTTTAATAACTGGAGGAAACAGCCGGATTTGGCCGAGGCCGTCGCAGCTATTCGGTCTTTGGCGGCTGTAATACGGTCCAGTCAGGCCACGACAATGATGGAGCTCGAAATTGAGCTGAAAAAGGCATCGGACTCTCTGAAGTCATGGGATACAACTTCAATATCATTGACGGCTGGGTGTGATTTGTTCATGCGGTATGTAACTAGAACATCGGCTTTAGAATATGAGGATTTCAAGTCTGCTAAGTCTCGCCTGATTGAACGTGCAGAAAAGTTTGGGGAGATATCTTGTAAGGCACGGAGAATTATTGCAATGCTCAGTCAGGATTTCATTTTTGATGGTTGTACAATTTTGGTCCATGGTTTCTCTAGAGTTGTTATGGAAGTTCTGAGGTTAGCTGCACAGAATAAGAAGCTCTTTAGAGTGTTTTGCACAGAAGGAAGACCAGACAGGACAGGGTTGCGTCTATCCAATGAGCTAGCTAAACTTGATGTTCCTGTAAAGCTCCTAATTGACTCAGCAGTAGCATATACGATGGATGAGGTTGACATGGTTCTAGTTGGGGCTGATGGAGTTGTTGAAAGTGGAGGTATAATCAACATGATGGGCACCTATCAAATAGCATTAGTGGCACATAGCATGAACAAACCGATGTATGTAGCTGCTGAGAGTTATAAGTTTGCCCGACTCTACCCATTAGATCAGAAAGACATGGCCCCTGCCCTGCGTCCCATTGATTTTGGGGTTCCTATCCCATCCAAGGTTGAAGTGGAAAAATCTGCTCGTGATTATACTCCTCCTCAATACCTTACTCTTCTCTTCACAGATTTGGGCGTTCTTTCTCCATCTGTGGTGAGTGACGAGCTCATCCAACTATATTTATAG 1188 46.04 MWWRSASFILDKQQTEGVSKAAETLSISPPVDESSMADTFQNPNPKISAYYQSRASHTAVVTSDWLAQAQAAVGFPTDEQLLSEADVRDSESGKPFSVIDEFNNWRKQPDLAEAVAAIRSLAAVIRSSQATTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFKSAKSRLIERAEKFGEISCKARRIIAMLSQDFIFDGCTILVHGFSRVVMEVLRLAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYTMDEVDMVLVGADGVVESGGIINMMGTYQIALVAHSMNKPMYVAAESYKFARLYPLDQKDMAPALRPIDFGVPIPSKVEVEKSARDYTPPQYLTLLFTDLGVLSPSVVSDELIQLYL 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3191706 3195484 + Cp4.1LG17g04380.1 Cpe17g00426 483744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00426 395 Pfam Initiation factor 2 subunit family 109 383 IPR000649 GO:0044237
Cpe17g00426 395 SUPERFAMILY NagB/RpiA/CoA transferase-like 111 394 IPR037171 -
Cpe17g00426 395 Gene3D - 199 395 IPR042529 -
Cpe17g00426 395 Gene3D - 95 196 IPR042528 -
Cpe17g00426 395 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 39 395 - -
Cpe17g00426 395 Coils Coil 133 153 - -
Cpe17g00426 395 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 39 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01423 Cpe-Chr4:11427317 Cpe17g00426 Cpe-Chr17:3191706 5.27E-08 dispersed
Cpe13g00487 Cpe-Chr13:5035859 Cpe17g00426 Cpe-Chr17:3191706 1.85E-11 dispersed
Cpe17g00426 Cpe-Chr17:3191706 Cpe18g00739 Cpe-Chr18:7184511 1.92E-14 dispersed
Cpe17g00426 Cpe-Chr17:3191706 Cpe01g01920 Cpe-Chr1:16372713 3.48E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00426 K03239 - csv:101211420 735.332