Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00445 ATGCAACATCAGAGATTGAAGCAACAACAACAACAAGCTTTGATGCAGCAAGCTTTGCTTCAGCAACAATCTCTTTATCATCCTGGTCTTTTAGCTCCCCCTCAGCTTGAACCAATTCCAAGTGGAAATTTACCCCCAGGCTTTGATCCAAGCACCTGCCGCAGTGTGTACGTAGGAAATATACATACACAAGTAACAGAACCACTTCTTCAAGAGGTTTTCGGGAGTACAGGCCTTGTTGAAAACTGCAAGCTTGTCAGAAAGGAGAAGGTAAGTGGCTTGGAAGTCGACAGATTCGCTGCAACTGGGCTACCAAAGGTGCTGGATCCAATGAAGACAAGCAGAGCTCAGATGTTAAAAGCATTGCAGAACTTACGAATGGATCATCTGCTTGAACCAATTCCAAGTGGAAATTTACCCCCAGGCTTTGATCCAAGCACCTGCCGCAGTGTGTACGTAGGAAATATACATACACAAGTAACAGAACCACTTCTTCAAGAGGTTTTCGGGAGTACAGGCCTTGTTGAAAACTGCAAGCTTGTCAGAAAGGAGAAGTCATCCTATGGATTTATTCACTATTTTGATCGCAGATCGGCTGCTATGGCTATTTTGTCACTTAATGGGAGGCATTTGTTTGGGCAGCCTATCAAAGTAAATTGGGCTTATGCTAGTGGTCAAAGAGAGGACACATCAGAAGATGGTAAAGAGACGGTTAATAGTGATGCCCCGGAGAACAATCCTCAGTACACTACTGTTTATGCGACGCAGGTTGATCTTCATCGCCATTTTCATGCCCTTGGGGCTGGTGTGATTGAGGAGGTTCGCATCCAGCGCGATAAAGGTTTTGGTTTTGTTAGATATAGCACTCATGCTGAGGCAGCTCTGGCCATTCAGATGGGGAATACTCAGTCATTTCTTTGCGGAAAACAGATCAAGTGCTCTTGGGGAAGCAAACCAACTCCACCTGGAACTATCTCGAACCCACTTCCTCCGCCTGCAGCAGTTCCAATGCAGGGGCTGTCCGCAACTGACCTCTTAGCATACGAGCGGCAACTGGCAATGAGCAAAATGGGGGGCGTCCATGCCCTTATGCACCACCCCCAGGCTCCACATCCTTTAAAGCAGGCAGCAGCCATGGGGATGGGTGGTGCTGCTGGCTCAAGTCAGGCCATCTATGATGGTGGGTTTCAGAACGTTGCTGCAGCTCAGCAGCTCATGTATTATCAGTAA 1230 47.4 MQHQRLKQQQQQALMQQALLQQQSLYHPGLLAPPQLEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFGSTGLVENCKLVRKEKVSGLEVDRFAATGLPKVLDPMKTSRAQMLKALQNLRMDHLLEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFGSTGLVENCKLVRKEKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSEDGKETVNSDAPENNPQYTTVYATQVDLHRHFHALGAGVIEEVRIQRDKGFGFVRYSTHAEAALAIQMGNTQSFLCGKQIKCSWGSKPTPPGTISNPLPPPAAVPMQGLSATDLLAYERQLAMSKMGGVHALMHHPQAPHPLKQAAAMGMGGAAGSSQAIYDGGFQNVAAAQQLMYYQ 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3318226 3324133 - Cp4.1LG17g04170.1 Cpe17g00445 483763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00445 409 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 2 92 - -
Cpe17g00445 409 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 125 231 - -
Cpe17g00445 409 SUPERFAMILY RNA-binding domain, RBD 239 322 IPR035979 GO:0003676
Cpe17g00445 409 Gene3D - 231 322 IPR012677 -
Cpe17g00445 409 Gene3D - 143 230 IPR012677 -
Cpe17g00445 409 SMART rrm1_1 55 117 IPR000504 GO:0003723
Cpe17g00445 409 SMART rrm1_1 150 219 IPR000504 GO:0003723
Cpe17g00445 409 SMART rrm1_1 251 314 IPR000504 GO:0003723
Cpe17g00445 409 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 230 409 - -
Cpe17g00445 409 CDD RRM1_TIA1_like 151 221 - -
Cpe17g00445 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 311 IPR000504 GO:0003723
Cpe17g00445 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 151 217 IPR000504 GO:0003723
Cpe17g00445 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 318 IPR000504 GO:0003723
Cpe17g00445 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 223 IPR000504 GO:0003723
Cpe17g00445 409 Gene3D - 1 106 IPR012677 -
Cpe17g00445 409 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 125 231 - -
Cpe17g00445 409 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 92 - -
Cpe17g00445 409 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 230 409 - -
Cpe17g00445 409 SUPERFAMILY RNA-binding domain, RBD 134 227 IPR035979 GO:0003676
Cpe17g00445 409 SUPERFAMILY RNA-binding domain, RBD 15 89 IPR035979 GO:0003676
Cpe17g00445 409 MobiDBLite consensus disorder prediction 227 247 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01768 Cpe17g00445 CCT
Cpe02g01768 Cpe17g00445 ECH
Cpe12g00570 Cpe17g00445 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00445 Cpe-Chr17:3318226 Cpe08g00113 Cpe-Chr8:728182 7.97E-09 dispersed
Cpe12g00570 Cpe-Chr12:5796751 Cpe17g00445 Cpe-Chr17:3318226 8.89E-47 wgd
Cpe17g00445 Cpe-Chr17:3318226 Cpe03g01015 Cpe-Chr3:8291590 1.37E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00445 K13201 - csv:101207738 477.248