Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe17g00469 | ATGGATGGAGGAGGCGCAGTGCATAATCGTTCAGTCGAAGATGTTTTCAGTGATTTTAGAGGCCGAAGAAGTGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTTTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGTTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAACTCCCAGAGCCAGCATTGGGTATTAATTTTGCAAGAGATGGTATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCTGTCCATAGCGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAGCTGATAGGAGGCGGCTTTTTAATATGATAAACGATTTGCCAACTGTATTTGAAGTAGTCACTGGTGTTGCAAAGAAACCAGCCAAGGAAAAGTCGTCGAGTGCTAATGGTAGCAGATCCAAGTCCAACTTTAAAACGAGGGAAGCTGAAATCCATGGAATGTATTCAAGGCAACCGCAGGCAAGGGAAGAGGTAGAGGCCTTGTATCAAGAAGACGAAGACGAGCACGGAGACACGTTGTGTGGGGCATGTGGTGAGAATTATGCATCAGATGAATTTTGGATTTGCTGTGATATCTGCGAGAAGTGGTTCCATGGGAAATGCGTGAGAATAACTCCTGCCAAAGCAGAGCACATCAAGCAATACAAATGCCCATCCTGCAGCCACAAGAGAGGCCGCGTTTAA | 756 | 44.44 | MDGGGAVHNRSVEDVFSDFRGRRSGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKADRRRLFNMINDLPTVFEVVTGVAKKPAKEKSSSANGSRSKSNFKTREAEIHGMYSRQPQAREEVEALYQEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSHKRGRV | 251 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 3498302 | 3501352 | + | Cp4.1LG17g04580.1 | Cpe17g00469 | 483787 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe17g00469 | 251 | ProSiteProfiles | Zinc finger PHD-type profile. | 195 | 247 | IPR019787 | - | |
| Cpe17g00469 | 251 | SUPERFAMILY | FYVE/PHD zinc finger | 187 | 249 | IPR011011 | - | |
| Cpe17g00469 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 246 | IPR013083 | - | |
| Cpe17g00469 | 251 | Pfam | Alfin | 11 | 139 | IPR021998 | GO:0006355|GO:0042393 | |
| Cpe17g00469 | 251 | ProSitePatterns | Zinc finger PHD-type signature. | 198 | 244 | IPR019786 | - | |
| Cpe17g00469 | 251 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 6 | 250 | - | - | |
| Cpe17g00469 | 251 | PANTHER | CPG BINDING PROTEIN | 6 | 250 | IPR045104 | GO:0006355|GO:0042393 | |
| Cpe17g00469 | 251 | CDD | PHD_AL_plant | 197 | 247 | IPR044104 | - | |
| Cpe17g00469 | 251 | SMART | PHD_3 | 197 | 245 | IPR001965 | - | |
| Cpe17g00469 | 251 | Pfam | PHD-finger | 198 | 246 | IPR019787 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe12g00597 | Cpe17g00469 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g00130 | Cpe-Chr1:750940 | Cpe17g00469 | Cpe-Chr17:3498302 | 6.20E-103 | dispersed | |
| Cpe01g00797 | Cpe-Chr1:4705255 | Cpe17g00469 | Cpe-Chr17:3498302 | 5.87E-95 | dispersed | |
| Cpe01g01035 | Cpe-Chr1:6128234 | Cpe17g00469 | Cpe-Chr17:3498302 | 4.35E-89 | dispersed | |
| Cpe03g00051 | Cpe-Chr3:277286 | Cpe17g00469 | Cpe-Chr17:3498302 | 9.90E-99 | dispersed | |
| Cpe07g01069 | Cpe-Chr7:9501216 | Cpe17g00469 | Cpe-Chr17:3498302 | 2.97E-129 | dispersed | |
| Cpe08g01225 | Cpe-Chr8:8916056 | Cpe17g00469 | Cpe-Chr17:3498302 | 3.26E-88 | dispersed | |
| Cpe11g01191 | Cpe-Chr11:9739053 | Cpe17g00469 | Cpe-Chr17:3498302 | 8.87E-126 | dispersed | |
| Cpe12g00597 | Cpe-Chr12:5968899 | Cpe17g00469 | Cpe-Chr17:3498302 | 7.41E-163 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 50800 | PF12165 | Alfin | 7.20E-68 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe17g00469 | - | - | csv:101222322 | 481.1 |