Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00470 ATGAATTTGGGAGCGGCGGAGGAAGAATCGCCGCAGGAGATTCATATCCCTGCCGAAATCGATTGGCAAATGCTTGATAAATCTAAATTCTTCTTTCTCGGTGCAGCGTTGTTTTCAGGCGTTTCGGCGTCTCTTTACCCTATGGTGGTGTTGAAAACTCGTCAACAGGTTGCTTATTCGGAGCTTCCGTGCTTCAGAACTGCATTTTCTCTCGTCCGCCATGAAGGTTTTCGTGCTCTGTACAGAGGATTTGGAACTTCTCTGATGGGGACTATCCCTGCTAGGGCTCTGTACATGGGAGCCCTAGAGTGTACAAAGAGCTATGTCGGAACCGCCACTGTTAGAATGGGATTTCCAGAGGCTACTGCCGCTACAATTGCTAATGCAGCCGCTGGATTGAGTGCTGCAATGGCCGCTCAACTCGTATGGACTCCCGTTGATGTAGTGAGTCAAAGACTGATGGTTCAAAGTAGCTCCTCCATTCATTACATCAATGGAATCGATGCGTTTCGAAAGATCCTCAACGCTGACGGTCTCCGAGGCCTCTACCGAGGCTTCGGGATATCGATTATGACATACGCGCCATCGAATGCGATGTGGTGGGCTTCTTATTATGTAGCACAGCGGCTGATTTGGGGAGGAATTGGATGCTATCAAGCTAAGAAGGTTGTTGGTGAAGGCAATGACAATGGGGCTAATGTTTACAGGCCAGATTCCAAGACTGTGATGGCAGTACAGGGTGGGAGCGCAGCGATGGCGGGCAGTATCTCGGCTTTGATAACAATGCCTCTTGATACAATCAAGACAAGATTGCAGGTTTTGGATGGGGATGAGAATGGAAGAAGAGGGCCAACAATTGGTCAGACCTTGAGAAATTTAGTAAGGGAAGGCGGGTGGGCGGCGTGTTATCGAGGTTTGGCGCCCCGGTGCGCGTCGATGTCGATGTCTGCAACGACAATGATCACCACATATGAACTTCTCAAACGGCTATCAACCAAGAATCCAGAGGGTTTAATAAGCTAA 1023 49.17 MNLGAAEEESPQEIHIPAEIDWQMLDKSKFFFLGAALFSGVSASLYPMVVLKTRQQVAYSELPCFRTAFSLVRHEGFRALYRGFGTSLMGTIPARALYMGALECTKSYVGTATVRMGFPEATAATIANAAAGLSAAMAAQLVWTPVDVVSQRLMVQSSSSIHYINGIDAFRKILNADGLRGLYRGFGISIMTYAPSNAMWWASYYVAQRLIWGGIGCYQAKKVVGEGNDNGANVYRPDSKTVMAVQGGSAAMAGSISALITMPLDTIKTRLQVLDGDENGRRGPTIGQTLRNLVREGGWAACYRGLAPRCASMSMSATTMITTYELLKRLSTKNPEGLIS 340
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
17 3502403 3503425 - Cp4.1LG17g04640.1 Cpe17g00470 483788
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00470 340 Gene3D Mitochondrial carrier domain 30 336 IPR023395 -
Cpe17g00470 340 Pfam Mitochondrial carrier protein 249 334 IPR018108 -
Cpe17g00470 340 Pfam Mitochondrial carrier protein 38 109 IPR018108 -
Cpe17g00470 340 Pfam Mitochondrial carrier protein 126 211 IPR018108 -
Cpe17g00470 340 SUPERFAMILY Mitochondrial carrier 23 327 IPR023395 -
Cpe17g00470 340 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 336 - -
Cpe17g00470 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 210 IPR018108 -
Cpe17g00470 340 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Cpe17g00470 340 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
Cpe17g00470 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Cpe17g00470 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 241 330 IPR018108 -
Cpe17g00470 340 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 336 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00281 Cpe-Chr2:1456039 Cpe17g00470 Cpe-Chr17:3502403 6.95E-160 dispersed
Cpe06g00253 Cpe-Chr6:1347418 Cpe17g00470 Cpe-Chr17:3502403 8.28E-157 dispersed
Cpe13g00986 Cpe-Chr13:8149902 Cpe17g00470 Cpe-Chr17:3502403 7.19E-73 dispersed
Cpe17g00470 Cpe-Chr17:3502403 Cpe10g00970 Cpe-Chr10:5487159 3.61E-22 dispersed
Cpe12g00598 Cpe-Chr12:5973612 Cpe17g00470 Cpe-Chr17:3502403 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00470 K15121 - csv:101210602 572.392