Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe17g00470 | ATGAATTTGGGAGCGGCGGAGGAAGAATCGCCGCAGGAGATTCATATCCCTGCCGAAATCGATTGGCAAATGCTTGATAAATCTAAATTCTTCTTTCTCGGTGCAGCGTTGTTTTCAGGCGTTTCGGCGTCTCTTTACCCTATGGTGGTGTTGAAAACTCGTCAACAGGTTGCTTATTCGGAGCTTCCGTGCTTCAGAACTGCATTTTCTCTCGTCCGCCATGAAGGTTTTCGTGCTCTGTACAGAGGATTTGGAACTTCTCTGATGGGGACTATCCCTGCTAGGGCTCTGTACATGGGAGCCCTAGAGTGTACAAAGAGCTATGTCGGAACCGCCACTGTTAGAATGGGATTTCCAGAGGCTACTGCCGCTACAATTGCTAATGCAGCCGCTGGATTGAGTGCTGCAATGGCCGCTCAACTCGTATGGACTCCCGTTGATGTAGTGAGTCAAAGACTGATGGTTCAAAGTAGCTCCTCCATTCATTACATCAATGGAATCGATGCGTTTCGAAAGATCCTCAACGCTGACGGTCTCCGAGGCCTCTACCGAGGCTTCGGGATATCGATTATGACATACGCGCCATCGAATGCGATGTGGTGGGCTTCTTATTATGTAGCACAGCGGCTGATTTGGGGAGGAATTGGATGCTATCAAGCTAAGAAGGTTGTTGGTGAAGGCAATGACAATGGGGCTAATGTTTACAGGCCAGATTCCAAGACTGTGATGGCAGTACAGGGTGGGAGCGCAGCGATGGCGGGCAGTATCTCGGCTTTGATAACAATGCCTCTTGATACAATCAAGACAAGATTGCAGGTTTTGGATGGGGATGAGAATGGAAGAAGAGGGCCAACAATTGGTCAGACCTTGAGAAATTTAGTAAGGGAAGGCGGGTGGGCGGCGTGTTATCGAGGTTTGGCGCCCCGGTGCGCGTCGATGTCGATGTCTGCAACGACAATGATCACCACATATGAACTTCTCAAACGGCTATCAACCAAGAATCCAGAGGGTTTAATAAGCTAA | 1023 | 49.17 | MNLGAAEEESPQEIHIPAEIDWQMLDKSKFFFLGAALFSGVSASLYPMVVLKTRQQVAYSELPCFRTAFSLVRHEGFRALYRGFGTSLMGTIPARALYMGALECTKSYVGTATVRMGFPEATAATIANAAAGLSAAMAAQLVWTPVDVVSQRLMVQSSSSIHYINGIDAFRKILNADGLRGLYRGFGISIMTYAPSNAMWWASYYVAQRLIWGGIGCYQAKKVVGEGNDNGANVYRPDSKTVMAVQGGSAAMAGSISALITMPLDTIKTRLQVLDGDENGRRGPTIGQTLRNLVREGGWAACYRGLAPRCASMSMSATTMITTYELLKRLSTKNPEGLIS | 340 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 3502403 | 3503425 | - | Cp4.1LG17g04640.1 | Cpe17g00470 | 483788 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe17g00470 | 340 | Gene3D | Mitochondrial carrier domain | 30 | 336 | IPR023395 | - | |
| Cpe17g00470 | 340 | Pfam | Mitochondrial carrier protein | 249 | 334 | IPR018108 | - | |
| Cpe17g00470 | 340 | Pfam | Mitochondrial carrier protein | 38 | 109 | IPR018108 | - | |
| Cpe17g00470 | 340 | Pfam | Mitochondrial carrier protein | 126 | 211 | IPR018108 | - | |
| Cpe17g00470 | 340 | SUPERFAMILY | Mitochondrial carrier | 23 | 327 | IPR023395 | - | |
| Cpe17g00470 | 340 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J | 1 | 336 | - | - | |
| Cpe17g00470 | 340 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 123 | 210 | IPR018108 | - | |
| Cpe17g00470 | 340 | PRINTS | Mitochondrial carrier protein signature | 81 | 99 | IPR002067 | GO:0055085 | |
| Cpe17g00470 | 340 | PRINTS | Mitochondrial carrier protein signature | 132 | 154 | IPR002067 | GO:0055085 | |
| Cpe17g00470 | 340 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 26 | 108 | IPR018108 | - | |
| Cpe17g00470 | 340 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 241 | 330 | IPR018108 | - | |
| Cpe17g00470 | 340 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN | 1 | 336 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g00281 | Cpe-Chr2:1456039 | Cpe17g00470 | Cpe-Chr17:3502403 | 6.95E-160 | dispersed | |
| Cpe06g00253 | Cpe-Chr6:1347418 | Cpe17g00470 | Cpe-Chr17:3502403 | 8.28E-157 | dispersed | |
| Cpe13g00986 | Cpe-Chr13:8149902 | Cpe17g00470 | Cpe-Chr17:3502403 | 7.19E-73 | dispersed | |
| Cpe17g00470 | Cpe-Chr17:3502403 | Cpe10g00970 | Cpe-Chr10:5487159 | 3.61E-22 | dispersed | |
| Cpe12g00598 | Cpe-Chr12:5973612 | Cpe17g00470 | Cpe-Chr17:3502403 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe17g00470 | K15121 | - | csv:101210602 | 572.392 |