Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00472 ATGTATCTTCTGTTTTGGAAAAAGGAATCTTTTGCTTATATTTTGCGCTATTTTCTGCTTGCTGCTATGACAGAATTAATGGCGGGAGATTCTAAATATTTTGAAGAAACCCATTACGCAGAACCAGAAGCGAATTCTCAGTCTCCAGCGAAGAAAAAGAAGAAGAGTGAAAAGAAGAAGAAACGAGTTCCACCTGTGAATACAAAAATCCAAGTCCTCAGCAACCATCCTGAGAAGATTCCACCATTAGTTGGTTATTTCCCCTCTGGGTATGATCCTAACAAGGATCCCAATGAGGAAGCGGTCGAGGAACAAAATTCTGTAAGGGCTAAGGTTTATAGGCACAAGAAAAAACCAAATAGGATGCAGCTGGTTGTAAGTCCAACAGGGTTGAATGTGGATTTTGTTGGTACCAATTACTTGGGTGAGGCTACTGCTGGAAAACAACATTGCAGCTATGCTCTCGGTGTTCTTGATAAGGCAACCCAAAGCTTAAAGATTGTGCCTATTGCATCAAATATGATATTTAGATTGGATCCTAAAGTTAGAGGTTCAGATGTTCCTGAAAGTGAATCCCCAAGTGTGGCGAACGACGAGCTCTCTGTGCAGGAGAAAGCTGATAGAATGAGAGAGCTCAGCAATCTCTATGGAACGAAGAAGTCGATAAAACAGGCAAAGAAGCTGCTTTCTTTGAAGCAAGAGGATGATCCTGAGACCAAGAAGGATCTAGATGGGAAAATGAAAAATGTTGTGGTAAACAAAGAGGCGTTGGAAAGTTCGAATGCACAAATTTCTCGTAATATACCGACATATAATGCTTCTGCAACGACTCCACAAGAAGCTTACCCCCTCGACAAGATTATCCTCAAGGGAGAATGGGGTTTCCTGGAAGATCTTTATTTCCTTTTGCAAGCAGAATCTGAAATAAGTGCCAATTATCCAGCCTTTGTCCGCAACAGAATTTATAAATTGCAAGACATTCAGGATGAGGAAGAGAAAAAGAAGCTCTGCTGCATATATTCATACATCACTCATCTAATAAAGTATAAGGATCAGCATTCTATGGATGGCGTTTCTTCTGTTAAGGGCCATAAAATTCCTAGCATGCTACGACAAAAGTTCTCATCCATGTTTTCAACTACGGAGTCGAGAAGACTGTCAGCAGAGAAAACCGATCTTCTCATTAGCCACGTTTTGGTGCTCGCGTTATTCGCCGATGAATTCAGCAGCGATCCATCTGACATAGCAAGGGATCTGAGAACTAGTCCTTTCACTCTAAGAGTCCATTATGACAATCTGGTTTATACGCAAGAACAACTTGTCATTGGTTACGCTTCCTGTCCCGCTTCAATTTCCCGAGTTGAGGCAAAAGAGACGACGATAAGCAAGATGAGATTTGAATCATTCAATTTCTTGGTCGAGAAGGATGCGGATACGGTTCCTAAGGAGTATCGTCCACCGACTGATGCTGAATTGCATCAGTTCTTCCTTCCATACCGAGGATTCTGTGCACGAAAAGGAATAGTTGCAAAGGAGATTGTCATCCATGACATTGATGTTCCAAGTGCACTTATTCACTATATCAATAAACACTCCATTAGCAACATTGTTGTGGGTGCTTCCAGCCGGAATGCTTTTACGAGGACGTTCAAACATGCAGATGTCTCAACATGTTTGCTCAAATCAACTCCAGAATCATGTTCTGTATATGTCATAGCTAGAGGGAAAGTTCATACTAAGAGATTGAGAAAGCGATACATGTCACTAACTGATGGGAAAGAAAAACCATCCGGAACTCTTCATGCTGACAAGCATCGTTATAGCAACAGTGTTGATTCACTGTCAAGCGTTAGTGACTTTTCAGGGCCTCTCAGTTTCAGATCAACTGGCACATCATCCTCTGAGAGCTTAGATTTTTCGTTAACCTCCTCAGAGAGTAATTCAAAGAGCTTTGTTACCTCTAACACAGCAGCTTCCATAGAATCTGAGATGAGAAAGTTAAGGTTTGAACTCAAAGGGAAGATGGAAATGTATGAATCAGCTTGCAAGGAAGCTCTAGAAGCAAAACAAAAGGCAAATGATCTCGCACAATTGAAGATGAAAGAAGCGAAAAAGTTCGAGCGAGGTAAATCTGCAGAAGAGGTTTTAACAGCATTGTCAGAGCTTGAGAAGGAGAAAAACAAGGCTGGGACAGAAGCAGCTCTAATGGCACAAAGGCTGGAAGAATTAGAGATCCAGAAAAAGCGAAATATTGCTGAAAAAAAGGCTAGGACTGAGGCGGAGGAGAAGCAGAAAACAATTGATTTATTTGAACGCACTAATATCTGCTTCAAACGATACAGAATTGGCGAGATCGAAGCAGCAACAGATCATTTTAATGAGTCAAACAAGATTGGTGAAGGGGGTTATGGACCTGTTTACCAAGCCTTTCTCGATCATACTTCTGTTGCCATTAAGATGTTGAGCCCAGAGAGATCTCATGGGCAGAGACAATTCCAGCAAGAGATTGAGGTTTTAAGCCGCATGAGGCATCCACACATGGTTCTCCTTATGGGTGCCTGCCCAGAATATGGTTGCCTTGTTTATGAATATATGGAAAACGGGAGCTTAGAAGACCGTCTTTTCCGAAAAGACGACACTCCTCCAATCCCTTGGAAAACTCGTTTCAGGATAGCTGCTGACATTGCCACTGCACTTCTCTTCCTTCATCAAATGAAGCCAGAACCCGTGGTGCATCGCGATCTCAAACCAGCAAACATTCTCTTAGATCAGAACTATGTGAGCAAAATAGGCGATGTGGGTTTGGCCAGGCTAGTCCCGCCGTCGGTTGCTGATAGTGTCACTCAATATCACATGACGGCTGCAGCTGGAACCTTCTGTTACATCGATCCAGAATACCAACAAACAGGAATGCTAGGTGTGAAATCAGATATTTACTCATTTGGTGTTCTGCTACTCCAGCTCATCACTGCAAGGTCACCAATGGGTCTTTCATATCAGGTTGAGGAGGCCATTGAACACGGCACATTCCCACAGATACTTGATCCTACAATTACAGATTGGCCCATTCAAGATACTCTTGGACTCGCTCAATTAGCCCTGAAGTGCTGTGAGCTAAGGAAAAGAGATAGACCCGACCTCGGTTCCGTTATATTACCTGAACTGATCAGGCTAAAAAAATTGGGATTGAGCGGAATACCACCAAAGAGGAAGCTCACAGCTTTTGGGAGAGCACATGGTCAACGCACTTCTAACTCAGCTCCACATTTCAAGGGATCAGAAAATGAGGTAGGAATGAGAAACAATCCTAACCTGCCAATGGAAATTCAACGTAGATCAATATGGCAGCGACTGACATTCAGTACGAGTTTTTGGAGCCAGAAGGATGGTATTGGTTCGAATACCATTTCTCAGCAGGAAATGGAAAATTGGAGCTCGAAGCACAACAGCGGTGCAGAAGTCTCAACCATACCACTGAGTGGAAACCCAATTGTAGAACTGAGGAAGCGGCGGCACATCAGTGAACGCTGTTGGTCATGTGTAAGTTGTGTTTCTCCTACTACTTCTGGGTTGAAAAACCCACACTCATTTGCATAA 3597 42.81 MYLLFWKKESFAYILRYFLLAAMTELMAGDSKYFEETHYAEPEANSQSPAKKKKKSEKKKKRVPPVNTKIQVLSNHPEKIPPLVGYFPSGYDPNKDPNEEAVEEQNSVRAKVYRHKKKPNRMQLVVSPTGLNVDFVGTNYLGEATAGKQHCSYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPESESPSVANDELSVQEKADRMRELSNLYGTKKSIKQAKKLLSLKQEDDPETKKDLDGKMKNVVVNKEALESSNAQISRNIPTYNASATTPQEAYPLDKIILKGEWGFLEDLYFLLQAESEISANYPAFVRNRIYKLQDIQDEEEKKKLCCIYSYITHLIKYKDQHSMDGVSSVKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLALFADEFSSDPSDIARDLRTSPFTLRVHYDNLVYTQEQLVIGYASCPASISRVEAKETTISKMRFESFNFLVEKDADTVPKEYRPPTDAELHQFFLPYRGFCARKGIVAKEIVIHDIDVPSALIHYINKHSISNIVVGASSRNAFTRTFKHADVSTCLLKSTPESCSVYVIARGKVHTKRLRKRYMSLTDGKEKPSGTLHADKHRYSNSVDSLSSVSDFSGPLSFRSTGTSSSESLDFSLTSSESNSKSFVTSNTAASIESEMRKLRFELKGKMEMYESACKEALEAKQKANDLAQLKMKEAKKFERGKSAEEVLTALSELEKEKNKAGTEAALMAQRLEELEIQKKRNIAEKKARTEAEEKQKTIDLFERTNICFKRYRIGEIEAATDHFNESNKIGEGGYGPVYQAFLDHTSVAIKMLSPERSHGQRQFQQEIEVLSRMRHPHMVLLMGACPEYGCLVYEYMENGSLEDRLFRKDDTPPIPWKTRFRIAADIATALLFLHQMKPEPVVHRDLKPANILLDQNYVSKIGDVGLARLVPPSVADSVTQYHMTAAAGTFCYIDPEYQQTGMLGVKSDIYSFGVLLLQLITARSPMGLSYQVEEAIEHGTFPQILDPTITDWPIQDTLGLAQLALKCCELRKRDRPDLGSVILPELIRLKKLGLSGIPPKRKLTAFGRAHGQRTSNSAPHFKGSENEVGMRNNPNLPMEIQRRSIWQRLTFSTSFWSQKDGIGSNTISQQEMENWSSKHNSGAEVSTIPLSGNPIVELRKRRHISERCWSCVSCVSPTTSGLKNPHSFA 1198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3514912 3524826 + Cp4.1LG17g04760.1 Cpe17g00472 483790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00472 1198 SMART serkin_6 792 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00472 1198 MobiDBLite consensus disorder prediction 628 647 - -
Cpe17g00472 1198 Pfam A49-like RNA polymerase I associated factor 107 432 IPR009668 GO:0003677|GO:0006351
Cpe17g00472 1198 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 431 1066 - -
Cpe17g00472 1198 MobiDBLite consensus disorder prediction 40 66 - -
Cpe17g00472 1198 Gene3D Transferase(Phosphotransferase) domain 1 865 1061 - -
Cpe17g00472 1198 ProSitePatterns Serine/Threonine protein kinases active-site signature. 910 922 IPR008271 GO:0004672|GO:0006468
Cpe17g00472 1198 MobiDBLite consensus disorder prediction 586 605 - -
Cpe17g00472 1198 SUPERFAMILY Protein kinase-like (PK-like) 773 1050 IPR011009 -
Cpe17g00472 1198 Coils Coil 675 695 - -
Cpe17g00472 1198 ProSiteProfiles Protein kinase domain profile. 792 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00472 1198 Gene3D Phosphorylase Kinase; domain 1 758 864 - -
Cpe17g00472 1198 Coils Coil 712 757 - -
Cpe17g00472 1198 PANTHER OS02G0152300 PROTEIN 431 1066 - -
Cpe17g00472 1198 Pfam Protein kinase domain 792 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00472 1198 MobiDBLite consensus disorder prediction 1078 1101 - -
Cpe17g00472 1198 CDD STK_N 484 575 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g01178 Cpe-Chr11:9672096 Cpe17g00472 Cpe-Chr17:3514912 4.72E-131 transposed
Cpe12g00605 Cpe-Chr12:6036061 Cpe17g00472 Cpe-Chr17:3514912 0 transposed
Cpe12g00604 Cpe-Chr12:6030918 Cpe17g00472 Cpe-Chr17:3514912 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62946 PF06870 RNA_pol_I_A49 2.50E-49 CL0662 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00472 - - bhj:120085014 998.423